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BaseInfo

ncRNA ID	novel_zma_miR5072
Species	Zea mays
Class	miRNA
Genome position	Chr8:30347860-30347981 [-]
Reference genome	RefGen_v4
Source	SRR2287164;SRR2089703
Length	24
Mature sequence(if miRNA)	99 - AGGAUUGAUUUGGUGACAAGGGGA - 122
Stem-loop(if miRNA)	--   A             AAG                   A          A       GA   AGG UUGAUUUGGUGAC   GGGAUCCCGGGAGGAUUGG GGGGAUUGAG GGGAAAU  A   ||| |||||||||||||   ||||||||||||||||||| |||||||||| |||||||   UCC AACUAAACCACUG   CCCUAGGGCCCUCCUAGCC CCCCUAACUC CCCUUUA  C AA   C             -GG                   -          C       AU
Stem-loop sequence	AGGAUUGAUUUGGUGACAAGGGGAUCCCGGGAGGAUUGGAGGGGAUUGAGAGGGAAAUGAACUAAUUUCCCCCUCAAUCCCCCCGAUCCUCCCGGGAUCCCGGGUCACCAAAUCAACCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   ||||||||||||||||||||*||| targets:108   UCCCCUUGUCACCAAAUCAACCCU   131 Target Full Sequence	1.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   ||||||||||||||||||||*||| targets:302   UCCCCUUGUCACCAAAUCAACCCU   325 Target Full Sequence	1.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   ||||||||||||||||||||*||| targets:116   UCCCCUUGUCACCAAAUCAACCCU   139 Target Full Sequence	1.5	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   ||||||||||||||||||||*||* targets:1501   UCCCCUUGUCACCAAAUCAACCCA   1524 Target Full Sequence	2.5	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EU945757.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   |===||*||||||||||||=|||| targets:69   UUUUCUGGUCACCAAAUCAGUCCU   92 Target Full Sequence	2.5	Zea mays clone 284734 mRNA sequence	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   |||*|||||=||||||||||*||| targets:1598   UCCACUUGUUACCAAAUCAACCCU   1621 Target Full Sequence	2.5	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   |||*|||*||||||||||||*||| targets:1654   UCCACUUAUCACCAAAUCAACCCU   1677 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   |||*|||*||||||||||||*||| targets:1654   UCCACUUAUCACCAAAUCAACCCU   1677 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   AGGGGAACAGUGGUUUAGUUAGGA   1   |||*|||*||||||||||||*||| targets:1762   UCCACUUAUCACCAAAUCAACCCU   1785 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget