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BaseInfo

ncRNA ID novel_zma_miR5071
Species Zea mays
Class miRNA
Genome position Chr5:182661683-182661807 [+]
Reference genome RefGen_v4
Source SRR1618882
Length 24
Mature sequence(if miRNA) 102 - AUCCGGAACAACCGAACAGAGCCU - 125
Stem-loop(if miRNA) --  -            A     -AU     -A     C    -C    --CAUCAAAA    UA
  GC CUGUUCGGUUGU CCGGA   GAGCC  GGAUU AUUC  AGCU          UCUA  U
  || |||||||||||| |||||   |||||  ||||| ||||  ||||          ||||  A
  CG GACAAGCCAACA GGCCU   CUCGG  CCUAA UAAG  UCGG          AGAU  A
UC  A            A     AAC     GG     U    AA    CCUAAUGAAG    UA
Stem-loop sequence GCCUGUUCGGUUGUACCGGAAUGAGCCAGGAUUCAUUCCAGCUCAUCAAAAUCUAUAUAAAUUAGAGAAGUAAUCCGGCUAAGAAUUAAUCCGGGGCUCCAAUCCGGAACAACCGAACAGAGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403060.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||||||||||||||||||||||
targets:2   AGGCUCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1185 from Patent EP2074227 NA coding protein psRNATarget
JB163521.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||||||||||||||||||||||
targets:2   AGGCUCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1185 from Patent EP2559767 NA coding protein psRNATarget
LQ235190.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||||||||||||||||||||||
targets:2   AGGCUCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1185 from Patent EP2985353 NA coding protein psRNATarget
LQ235198.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1193 from Patent EP2985353 NA coding protein psRNATarget
LQ235211.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1206 from Patent EP2985353 NA coding protein psRNATarget
LQ235195.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1190 from Patent EP2985353 NA coding protein psRNATarget
JB163496.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1160 from Patent EP2559767 NA coding protein psRNATarget
HI403068.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1193 from Patent EP2074227 NA coding protein psRNATarget
LQ235264.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1259 from Patent EP2985353 NA coding protein psRNATarget
LQ235250.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1245 from Patent EP2985353 NA coding protein psRNATarget
JB163589.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1253 from Patent EP2559767 NA coding protein psRNATarget
JB163469.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1133 from Patent EP2559767 NA coding protein psRNATarget
HI403065.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1190 from Patent EP2074227 NA coding protein psRNATarget
JB163581.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1245 from Patent EP2559767 NA coding protein psRNATarget
JB163580.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1244 from Patent EP2559767 NA coding protein psRNATarget
JB163595.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1259 from Patent EP2559767 NA coding protein psRNATarget
HI403119.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1244 from Patent EP2074227 NA coding protein psRNATarget
LQ235132.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1127 from Patent EP2985353 NA coding protein psRNATarget
HI402959.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1084 from Patent EP2074227 NA coding protein psRNATarget
HI403046.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1171 from Patent EP2074227 NA coding protein psRNATarget
LQ235165.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1160 from Patent EP2985353 NA coding protein psRNATarget
LQ235249.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1244 from Patent EP2985353 NA coding protein psRNATarget
JB163507.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1171 from Patent EP2559767 NA coding protein psRNATarget
JB163420.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1084 from Patent EP2559767 NA coding protein psRNATarget
LQ235258.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1253 from Patent EP2985353 NA coding protein psRNATarget
JB163542.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1206 from Patent EP2559767 NA coding protein psRNATarget
HI403120.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1245 from Patent EP2074227 NA coding protein psRNATarget
LQ235138.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1133 from Patent EP2985353 NA coding protein psRNATarget
HI403008.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1133 from Patent EP2074227 NA coding protein psRNATarget
HI403002.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1127 from Patent EP2074227 NA coding protein psRNATarget
JB163526.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1190 from Patent EP2559767 NA coding protein psRNATarget
JB163529.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1193 from Patent EP2559767 NA coding protein psRNATarget
LQ235089.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1084 from Patent EP2985353 NA coding protein psRNATarget
JB163463.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1127 from Patent EP2559767 NA coding protein psRNATarget
HI403035.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1160 from Patent EP2074227 NA coding protein psRNATarget
HI403134.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1259 from Patent EP2074227 NA coding protein psRNATarget
HI403081.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1206 from Patent EP2074227 NA coding protein psRNATarget
HI403128.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1253 from Patent EP2074227 NA coding protein psRNATarget
LQ235176.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2   AGGCCCUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1171 from Patent EP2985353 NA coding protein psRNATarget
BT041278.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:388   AGGCCCUGUUCGGUUGUUCCGGAU   411

0.0 Zea mays full-length cDNA clone ZM_BFb0135F17 mRNA, complete cds NA coding protein psRNATarget
XM_020549609.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:1258   AGGCCCUGUUCGGUUGUUCCGGAU   1281

0.0 PREDICTED: Zea mays hypothetical protein (LOC100275396), transcript variant X1, mRNA NA coding protein psRNATarget
BT043254.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||||||||*|||||||||||||
targets:1262   AGGCUCUGUUAGGUUGUUCCGGAU   1285

1.0 Zea mays full-length cDNA clone ZM_BFc0133D22 mRNA, complete cds NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:796   AGGCCCUGUUCGGUUGUUCCGGAU   819

0.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:891   AGGCCCUGUUCGGUUGUUCCGGAU   914

0.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658796.2
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2192   AGGCCCUGUUCGGUUGUUCCGGAU   2215

0.0 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658795.2
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||*|||||||||||||||||||
targets:2209   AGGCCCUGUUCGGUUGUUCCGGAU   2232

0.0 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X1, mRNA NA coding protein psRNATarget
JB163544.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-|||||||||||||||||||
targets:3   GGGC-CUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1208 from Patent EP2559767 NA coding protein psRNATarget
HI403083.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-|||||||||||||||||||
targets:3   GGGC-CUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1208 from Patent EP2074227 NA coding protein psRNATarget
LQ235213.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-|||||||||||||||||||
targets:3   GGGC-CUGUUCGGUUGUUCCGGAU   25

0.0 Sequence 1208 from Patent EP2985353 NA coding protein psRNATarget
EU962159.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||**|||||||||||||||||||
targets:636   AGGGACUGUUCGGUUGUUCCGGAU   659

0.0 Zea mays clone 240647 metallothionein-like protein type 2 mRNA, complete cds NA coding protein psRNATarget
EU964173.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||**|||||||||||||||||||
targets:638   AGGGACUGUUCGGUUGUUCCGGAU   661

0.0 Zea mays clone 276459 metallothionein-like protein type 2 mRNA, complete cds NA coding protein psRNATarget
NM_001156427.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||||||||*||||*||||||||
targets:1334   AGGCUCUGUUAGGUUUUUCCGGAU   1357

2.5 Zea mays DNA-repair protein XRCC1 (si687009g07(336)), mRNA NA coding protein psRNATarget
EU965019.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  ||||||||||*||||*||||||||
targets:1334   AGGCUCUGUUAGGUUUUUCCGGAU   1357

2.5 Zea mays clone 283239 DNA repair protein XRCC1 mRNA, complete cds NA coding protein psRNATarget
LQ238177.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||*|||||||||||||*|||||*
targets:1   AGGGUCUGUUCGGUUGUACCGGAA   24

2.5 Sequence 4172 from Patent EP2985353 NA coding protein psRNATarget
HI406047.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||*|||||||||||||*|||||*
targets:1   AGGGUCUGUUCGGUUGUACCGGAA   24

2.5 Sequence 4172 from Patent EP2074227 NA coding protein psRNATarget
JB166508.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||*|||||||||||||*|||||*
targets:1   AGGGUCUGUUCGGUUGUACCGGAA   24

2.5 Sequence 4172 from Patent EP2559767 NA coding protein psRNATarget
LQ238052.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||*|||||||||||||*|||||*
targets:2   AGGGUCUGUUCGGUUGUACCGGAA   25

2.5 Sequence 4047 from Patent EP2985353 NA coding protein psRNATarget
HI405922.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||*|||||||||||||*|||||*
targets:2   AGGGUCUGUUCGGUUGUACCGGAA   25

2.5 Sequence 4047 from Patent EP2074227 NA coding protein psRNATarget
JB166383.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||*|||||||||||||*|||||*
targets:2   AGGGUCUGUUCGGUUGUACCGGAA   25

2.5 Sequence 4047 from Patent EP2559767 NA coding protein psRNATarget
EU951433.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  |||*|||||||||||||*|||||*
targets:1222   AGGGUCUGUUCGGUUGUACCGGAA   1245

2.5 Zea mays clone 701850 mRNA sequence NA coding protein psRNATarget
JB163374.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-||||||||||||*|||||*
targets:3   GGGC-CUGUUCGGUUGUACCGGAA   25

2.5 Sequence 1038 from Patent EP2559767 NA coding protein psRNATarget
LQ235043.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-||||||||||||*|||||*
targets:3   GGGC-CUGUUCGGUUGUACCGGAA   25

2.5 Sequence 1038 from Patent EP2985353 NA coding protein psRNATarget
HI402913.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-||||||||||||*|||||*
targets:3   GGGC-CUGUUCGGUUGUACCGGAA   25

2.5 Sequence 1038 from Patent EP2074227 NA coding protein psRNATarget
HI407312.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-||||||||||||*|||||*
targets:15   GGGC-CUGUUCGGUUGUACCGGAA   37

2.5 Sequence 5437 from Patent EP2074227 NA coding protein psRNATarget
LQ239442.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-||||||||||||*|||||*
targets:15   GGGC-CUGUUCGGUUGUACCGGAA   37

2.5 Sequence 5437 from Patent EP2985353 NA coding protein psRNATarget
JB167773.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-||||||||||||*|||||*
targets:15   GGGC-CUGUUCGGUUGUACCGGAA   37

2.5 Sequence 5437 from Patent EP2559767 NA coding protein psRNATarget
XM_020551773.1
ncRNA:24   UCCGAGACAAGCCAACAAGGCCUA   1
  =|||-||||||||||||*|||||*
targets:2098   GGGC-CUGUUCGGUUGUACCGGAA   2120

2.5 PREDICTED: Zea mays putative disease resistance protein RGA1 (LOC109945454), mRNA NA coding protein psRNATarget
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