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BaseInfo

ncRNA ID novel_zma_miR5065
Species Zea mays
Class miRNA
Genome position Chr5:142249146-142249281 [+]
Reference genome RefGen_v4
Source SRR1618882;SRR1618883
Length 24
Mature sequence(if miRNA) 1 - GGUCUUAGGGCUGAUUUGGUGACC - 24
Stem-loop(if miRNA) --   C   -   C            -CC       C                       G      UA
  GGU UUA GGG UGAUUUGGUGAC   GGGAUCC GGGAGGAUUGGAGGGGAUUGAGG GGAAAU  G
  ||| ||| ||| ||||||||||||   ||||||| ||||||||||||||||||||||| ||||||
  UCG AAU CCC ACUAAACCACUG   CCCUAGG CCCUCCUAACCUCCCCUAACUCC CCUUUA  U
UU   U   U   A            UUC       A                       A      UU
Stem-loop sequence GGUCUUAGGGCUGAUUUGGUGACCCGGGAUCCCGGGAGGAUUGGAGGGGAUUGAGGGGGAAAUUAGUUUAUUUCCACCUCAAUCCCCUCCAAUCCUCCCAGGAUCCCCUUGUCACCAAAUCAACCCUUAAUGCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ070909.1
ncRNA:24   CCAGUGGUUUAGUCGGGAUUCUGG   1
  **|*=|||||||||||||*||||=
targets:4   UUUGGCCAAAUCAGCCCUCAGACU   27

2.5 TSA: Zea mays contig06546, mRNA sequence NA coding protein psRNATarget