ncRNA ID | novel_zma_miR5065 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:142249146-142249281 [+] |
Reference genome | RefGen_v4 |
Source | SRR1618882;SRR1618883 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GGUCUUAGGGCUGAUUUGGUGACC - 24 |
Stem-loop(if miRNA) |
--   C   -   C            -CC       C                       G      UA   GGU UUA GGG UGAUUUGGUGAC   GGGAUCC GGGAGGAUUGGAGGGGAUUGAGG GGAAAU  G   ||| ||| ||| ||||||||||||   ||||||| ||||||||||||||||||||||| ||||||   UCG AAU CCC ACUAAACCACUG   CCCUAGG CCCUCCUAACCUCCCCUAACUCC CCUUUA  U UU   U   U   A            UUC       A                       A      UU |
Stem-loop sequence | GGUCUUAGGGCUGAUUUGGUGACCCGGGAUCCCGGGAGGAUUGGAGGGGAUUGAGGGGGAAAUUAGUUUAUUUCCACCUCAAUCCCCUCCAAUCCUCCCAGGAUCCCCUUGUCACCAAAUCAACCCUUAAUGCUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ070909.1 |
|
2.5 | TSA: Zea mays contig06546, mRNA sequence | NA | coding protein | psRNATarget |