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BaseInfo

ncRNA ID	novel_zma_miR5062
Species	Zea mays
Class	miRNA
Genome position	Chr7:21347812-21347968 [-]
Reference genome	RefGen_v4
Source	SRR2287164;SRR2089699
Length	23
Mature sequence(if miRNA)	135 - UUUGGGAGCAAGUGGAAUGGAGG - 157
Stem-loop(if miRNA)	--                   G   G      A             GGCACC      AAUU    AAUAA  U    UAG   UUUGGGAGCAAGUGGAAUG AGG GAUUGA UGGGCUAGAAUCC      AUUCAA    GAAU     GG AUUG   A   ||||||||||||||||||| ||| |||||| |||||||||||||      ||||||    ||||     || ||||   AAACUCUCGUUCACUUUAC UCC CUAACU ACCCGAUCUUAGG      UAAGUU    CUUA     CC UAAC   C AC                   A   A      C             GGAUAA      ----    CCUCC  -    UCC
Stem-loop sequence	UUUGGGAGCAAGUGGAAUGGAGGGGAUUGAAUGGGCUAGAAUCCGGCACCAUUCAAAAUUGAAUAAUAAGGUAUUGUAGACCCUCAAUCCCCUCCAUUCUUGAAUAAUAGGGGAUUCUAGCCCACUCAAUCACCUACAUUUCACUUGCUCUCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406027.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   |||=||||=|||||||||||||| targets:101   CCUUCAUUUCACUUGCUCCCAAA   123 Target Full Sequence	1.0	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
JB166488.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   |||=||||=|||||||||||||| targets:101   CCUUCAUUUCACUUGCUCCCAAA   123 Target Full Sequence	1.0	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   |||=||||=|||||||||||||| targets:101   CCUUCAUUUCACUUGCUCCCAAA   123 Target Full Sequence	1.0	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
BT062966.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   |||=||||=|||||||||||||| targets:2637   CCUUCAUUUCACUUGCUCCCAAA   2659 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   |||=||||=|||||||||||||| targets:2637   CCUUCAUUUCACUUGCUCCCAAA   2659 Target Full Sequence	1.0	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT061256.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   ||||=||||||||||||=||||| targets:1896   CCUCUAUUCCACUUGCUUCCAAA   1918 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0127C16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   |||=||||=|||||||||||||| targets:2725   CCUUCAUUUCACUUGCUCCCAAA   2747 Target Full Sequence	1.0	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001150318.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   =|||||*|=|||||||||||||| targets:1035   UCUCCAAUUCACUUGCUCCCAAA   1057 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 2, mRNA	NA	coding protein	psRNATarget
EU963261.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   =|||||*|=|||||||||||||| targets:1035   UCUCCAAUUCACUUGCUCCCAAA   1057 Target Full Sequence	2.0	Zea mays clone 260003 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001320255.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   =|||||*|=|||||||||||||| targets:1244   UCUCCAAUUCACUUGCUCCCAAA   1266 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 1, mRNA	NA	coding protein	psRNATarget
BT017823.1	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   =||=||*||||=||||||||||| targets:865   UCUUCAAUCCAUUUGCUCCCAAA   887 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:23   GGAGGUAAGGUGAACGAGGGUUU   1   =||=||*||||=||||||||||| targets:3493   UCUUCAAUCCAUUUGCUCCCAAA   3515 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget