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BaseInfo

ncRNA ID	novel_zma_miR5057
Species	Zea mays
Class	miRNA
Genome position	Chr7:127573770-127573837 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	45 - CAUUUCUUUUUAGUUGUCGCUGGA - 68
Stem-loop(if miRNA)	--CA    U                     U  A     UUUC UUUUAGUUGUCGCUGGAUAGU CA U     |||| ||||||||||||||||||||| ||     AAAG AAAAUCAACAGCGAUUUAUCA GU U AGGC    C                     C  U
Stem-loop sequence	CAUUUCUUUUUAGUUGUCGCUGGAUAGUUCAAUUUUGCACUAUUUAGCGACAACUAAAACGAAACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403072.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:44   UCCAGCGACAACUAAAAAGAAACG   67 Target Full Sequence	1.5	Sequence 1197 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235202.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:44   UCCAGCGACAACUAAAAAGAAACG   67 Target Full Sequence	1.5	Sequence 1197 from Patent EP2985353	NA	coding protein	psRNATarget
JB163533.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:44   UCCAGCGACAACUAAAAAGAAACG   67 Target Full Sequence	1.5	Sequence 1197 from Patent EP2559767	NA	coding protein	psRNATarget
HI409551.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:47   UCCAGCGACAACUAAAAAGAAACG   70 Target Full Sequence	1.5	Sequence 7676 from Patent EP2074227	NA	coding protein	psRNATarget
JB170012.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:47   UCCAGCGACAACUAAAAAGAAACG   70 Target Full Sequence	1.5	Sequence 7676 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241681.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:47   UCCAGCGACAACUAAAAAGAAACG   70 Target Full Sequence	1.5	Sequence 7676 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241364.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:54   UCCAGCGACAACUAAAAAGAAACG   77 Target Full Sequence	1.5	Sequence 7359 from Patent EP2985353	NA	coding protein	psRNATarget
HI409234.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:54   UCCAGCGACAACUAAAAAGAAACG   77 Target Full Sequence	1.5	Sequence 7359 from Patent EP2074227	NA	coding protein	psRNATarget
JB169695.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:54   UCCAGCGACAACUAAAAAGAAACG   77 Target Full Sequence	1.5	Sequence 7359 from Patent EP2559767	NA	coding protein	psRNATarget
JB167785.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:57   UCCAGCGACAACUAAAAAGAAACG   80 Target Full Sequence	1.5	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:57   UCCAGCGACAACUAAAAAGAAACG   80 Target Full Sequence	1.5	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
HI407324.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:57   UCCAGCGACAACUAAAAAGAAACG   80 Target Full Sequence	1.5	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
JB163740.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |||||||||||*|||||||||||| targets:62   UCCAGCGACAAAUAAAAAGAAAUG   85 Target Full Sequence	1.5	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |||||||||||*|||||||||||| targets:62   UCCAGCGACAAAUAAAAAGAAAUG   85 Target Full Sequence	1.5	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
HI403279.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |||||||||||*|||||||||||| targets:62   UCCAGCGACAAAUAAAAAGAAAUG   85 Target Full Sequence	1.5	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:358   UCCAGCGACAACUAAAAAGAAACG   381 Target Full Sequence	1.5	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
BT062468.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:622   UCCAGCGACAACUAAAAAGAAACG   645 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:1213   UCCAGCGACAACUAAAAAGAAACG   1236 Target Full Sequence	1.5	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:1566   UCCAGCGACAACUAAAAAGAAACG   1589 Target Full Sequence	1.5	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
EU964807.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:1566   UCCAGCGACAACUAAAAAGAAACG   1589 Target Full Sequence	1.5	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:1202   UCCAGCGACAACUAAAAAGAAACG   1225 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551485.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||||||||||||||||||*| targets:2579   UCCAGCGACAACUAAAAAGAAACG   2602 Target Full Sequence	1.5	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI407230.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||||||||||||||*| targets:57   UUCAGCGACAACUAAAAAGAAACG   80 Target Full Sequence	1.5	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
JB167691.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||||||||||||||*| targets:57   UUCAGCGACAACUAAAAAGAAACG   80 Target Full Sequence	1.5	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||||||||||||||*| targets:57   UUCAGCGACAACUAAAAAGAAACG   80 Target Full Sequence	1.5	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008656230.2	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||||||||||||||*| targets:38   UUCAGCGACAACUAAAAAGAAACG   61 Target Full Sequence	1.5	PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA	NA	coding protein	psRNATarget
LQ241813.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||=|||||||||||||*| targets:47   UUCAGCGAUAACUAAAAAGAAACG   70 Target Full Sequence	2.5	Sequence 7808 from Patent EP2985353	NA	coding protein	psRNATarget
JB170144.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||=|||||||||||||*| targets:47   UUCAGCGAUAACUAAAAAGAAACG   70 Target Full Sequence	2.5	Sequence 7808 from Patent EP2559767	NA	coding protein	psRNATarget
HI409683.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||=|||||||||||||*| targets:47   UUCAGCGAUAACUAAAAAGAAACG   70 Target Full Sequence	2.5	Sequence 7808 from Patent EP2074227	NA	coding protein	psRNATarget
BT055583.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUU-AC   1   ||*|||||||||||||||||||-|| targets:886   UCGAGCGACAACUAAAAAGAAACUG   910 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUU-AC   1   ||*|||||||||||||||||||-|| targets:886   UCGAGCGACAACUAAAAAGAAACUG   910 Target Full Sequence	3.0	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget
LQ238250.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |||||||*||||||||||||||*| targets:47   UCCAGCGCCAACUAAAAAGAAACG   70 Target Full Sequence	2.5	Sequence 4245 from Patent EP2985353	NA	coding protein	psRNATarget
JB166581.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |||||||*||||||||||||||*| targets:47   UCCAGCGCCAACUAAAAAGAAACG   70 Target Full Sequence	2.5	Sequence 4245 from Patent EP2559767	NA	coding protein	psRNATarget
HI406120.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |||||||*||||||||||||||*| targets:47   UCCAGCGCCAACUAAAAAGAAACG   70 Target Full Sequence	2.5	Sequence 4245 from Patent EP2074227	NA	coding protein	psRNATarget
HI406357.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||*|||||||||||||||||*| targets:49   UCCAACGACAACUAAAAAGAAACG   72 Target Full Sequence	1.5	Sequence 4482 from Patent EP2074227	NA	coding protein	psRNATarget
JB166818.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||*|||||||||||||||||*| targets:49   UCCAACGACAACUAAAAAGAAACG   72 Target Full Sequence	1.5	Sequence 4482 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238487.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||*|||||||||||||||||*| targets:49   UCCAACGACAACUAAAAAGAAACG   72 Target Full Sequence	1.5	Sequence 4482 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||*||||||||||||*|||||| targets:62   UCCACCGACAACUAAAACGAAAUG   85 Target Full Sequence	1.5	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
JB163860.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||*||||||||||||*|||||| targets:62   UCCACCGACAACUAAAACGAAAUG   85 Target Full Sequence	1.5	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
HI403399.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||*||||||||||||*|||||| targets:62   UCCACCGACAACUAAAACGAAAUG   85 Target Full Sequence	1.5	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008667486.2	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   *=||||||||||||||||||||*| targets:1383   AUCAGCGACAACUAAAAAGAAACG   1406 Target Full Sequence	1.5	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963848.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |*|||||||||||||||*|||||| targets:790   UACAGCGACAACUAAAAUGAAAUG   813 Target Full Sequence	1.5	Zea mays clone 273406 salt tolerant protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158751.2	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |*|||||||||||||||*|||||| targets:939   UACAGCGACAACUAAAAUGAAAUG   962 Target Full Sequence	1.5	Zea mays salt tolerant protein (LOC100285861), mRNA	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||*|||||||||||||||*| targets:2164   UCCAGCUACAACUAAAAAGAAACG   2187 Target Full Sequence	2.5	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
EU971439.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   ||||||*|||||||||||||||*| targets:2164   UCCAGCUACAACUAAAAAGAAACG   2187 Target Full Sequence	2.5	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
LQ239435.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||*|||||||||||*| targets:57   UUCAGCGACAUCUAAAAAGAAACG   80 Target Full Sequence	2.5	Sequence 5430 from Patent EP2985353	NA	coding protein	psRNATarget
JB167766.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||*|||||||||||*| targets:57   UUCAGCGACAUCUAAAAAGAAACG   80 Target Full Sequence	2.5	Sequence 5430 from Patent EP2559767	NA	coding protein	psRNATarget
HI407305.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||*|||||||||||*| targets:57   UUCAGCGACAUCUAAAAAGAAACG   80 Target Full Sequence	2.5	Sequence 5430 from Patent EP2074227	NA	coding protein	psRNATarget
EU968044.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||*|||||||||||*| targets:1075   UUCAGCGACAUCUAAAAAGAAACG   1098 Target Full Sequence	2.5	Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT035546.1	ncRNA:24   AGGUCGCUGUUGAUUUUUCUUUAC   1   |=||||||||*|||||||||||*| targets:963   UUCAGCGACAUCUAAAAAGAAACG   986 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds	NA	coding protein	psRNATarget