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BaseInfo

ncRNA ID	novel_zma_miR5056
Species	Zea mays
Class	miRNA
Genome position	Chr7:140755628-140755714 [-]
Reference genome	RefGen_v4
Source	SRR2287164;SRR2287165;SRR1997865
Length	24
Mature sequence(if miRNA)	64 - GAUAAAUGUGGAAUUAAUAUGGUU - 87
Stem-loop(if miRNA)	--   --         A    U      UA    --CU   AG   A   GAU  AAAUGUGGA UUAA AUGGUU  GUCU    UUU  CAC U   |||  ||||||||| |||| ||||||  ||||    |||  |||   CUA  UUUAUAUCU GAUU UACUAA  CAGA    AGA  GUG A UC   AU         -    U      --    AAUU   AA   U
Stem-loop sequence	GAUAAAUGUGGAAUUAAUAUGGUUUAGUCUCUUUUAGCACAUAUGUGAAAGAUUAAAGACAAUCAUUUUAGUCUAUAUUUUAAUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170465.1	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   |||||||||||||=|||||||||| targets:143   AACCAUAUUAAUUUCACAUUUAUC   166 Target Full Sequence	1.5	Sequence 8129 from Patent EP2559767	NA	coding protein	psRNATarget
HI410004.1	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   |||||||||||||=|||||||||| targets:143   AACCAUAUUAAUUUCACAUUUAUC   166 Target Full Sequence	1.5	Sequence 8129 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242134.1	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   |||||||||||||=|||||||||| targets:143   AACCAUAUUAAUUUCACAUUUAUC   166 Target Full Sequence	1.5	Sequence 8129 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008674792.2	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   ||||||||||||||||||||||*| targets:1698   AACCAUAUUAAUUCCACAUUUACC   1721 Target Full Sequence	1.5	PREDICTED: Zea mays alpha-L-fucosidase 2 (LOC100285541), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU972757.1	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   ||||||||||||||||||||||*| targets:1528   AACCAUAUUAAUUCCACAUUUACC   1551 Target Full Sequence	1.5	Zea mays clone 387366 alpha-L-fucosidase 2 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158432.1	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   ||||||||||||||||||||||*| targets:1528   AACCAUAUUAAUUCCACAUUUACC   1551 Target Full Sequence	1.5	Zea mays alpha-L-fucosidase 2 (LOC100285541), mRNA	NA	coding protein	psRNATarget
XM_008674793.2	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   ||||||||||||||||||||||*| targets:1394   AACCAUAUUAAUUCCACAUUUACC   1417 Target Full Sequence	1.5	PREDICTED: Zea mays alpha-L-fucosidase 2 (LOC100285541), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542090.1	ncRNA:24   UUGGUAUAAUUAAGGUGUAAAUAG   1   ====||*|||=||||||||||||* targets:1866   GGUUAUUUUAGUUCCACAUUUAUA   1889 Target Full Sequence	3.0	PREDICTED: Zea mays actin cytoskeleton-regulatory complex protein pan1-like (LOC109941360), mRNA	NA	coding protein	psRNATarget