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BaseInfo

ncRNA ID	novel_zma_miR5052
Species	Zea mays
Class	miRNA
Genome position	Chr7:175591893-175591972 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	22
Mature sequence(if miRNA)	59 - GCGUCCCUCUCCUGGCCGUGGA - 80
Stem-loop(if miRNA)	--   U   -    C        G     --     -     U   GCG CCC UCUC UGGCCGUG AUCUC  CCAUG CCACG G   ||| ||| |||| |||||||| |||||  ||||| |||||   CGU GGG AGGG GCCGGUGC UGGAG  GGUGC GGUGC C CU   -   U    C        -     CU     U     U
Stem-loop sequence	GCGUCCCUCUCCUGGCCGUGGAUCUCCCAUGCCACGUGCUCGUGGUCGUGGUCGAGGUCGUGGCCGCGGGAUGGGUGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945316.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *=|=|||||||||||||*|||| targets:602   CUCGCGGCCAGGAGAGGCACGC   623 Target Full Sequence	2.5	Zea mays clone 257973 mRNA sequence	NA	coding protein	psRNATarget
EU969576.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *=|=|||||||||||||*|||| targets:926   CUCGCGGCCAGGAGAGGCACGC   947 Target Full Sequence	2.5	Zea mays clone 332592 glucan endo-1,3-beta-glucosidase 5 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT034763.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *=|=|||||||||||||*|||| targets:1036   CUCGCGGCCAGGAGAGGCACGC   1057 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0015O07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147188.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *=|=|||||||||||||*|||| targets:911   CUCGCGGCCAGGAGAGGCACGC   932 Target Full Sequence	2.5	Zea mays putative O-Glycosyl hydrolase superfamily protein (LOC100272735), mRNA	NA	coding protein	psRNATarget
BT039303.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *=|=|||||||||||||*|||| targets:911   CUCGCGGCCAGGAGAGGCACGC   932 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0005B10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066246.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *=|=|||||||||||||*|||| targets:1128   CUCGCGGCCAGGAGAGGCACGC   1149 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0125C18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544980.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *|=|=|||*||||||||||||= targets:521   CCUAUGGCGAGGAGAGGGACGU   542 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103631579 (LOC103631579), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544975.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *|=|=|||*||||||||||||= targets:622   CCUAUGGCGAGGAGAGGGACGU   643 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103631579 (LOC103631579), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008652459.2	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *|=|=|||*||||||||||||= targets:812   CCUAUGGCGAGGAGAGGGACGU   833 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103631579 (LOC103631579), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544974.1	ncRNA:22   AGGUGCCGGUCCUCUCCCUGCG   1   *|=|=|||*||||||||||||= targets:848   CCUAUGGCGAGGAGAGGGACGU   869 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103631579 (LOC103631579), transcript variant X2, mRNA	NA	coding protein	psRNATarget