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BaseInfo

ncRNA ID	novel_zma_miR5048
Species	Zea mays
Class	miRNA
Genome position	Chr6:156064554-156064678 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	102 - AAAUACGAUUUGUAGUGGCGGUUU - 125
Stem-loop(if miRNA)	--   A      G                    A               G   G  G        ACC CCACUA AAAUCGUAUUUCUACUGGCG UUCCUUAAGAAAACC CCA UA AAAUCC   ||| |||||| |||||||||||||||||||| ||||||||||||||| ||| || |||||A   UGG GGUGAU UUUAGCAUAAAGAUGACCGC AAGGAAUUCUUUUGG GGU AU UUUAGU UU   C      G                    C               G   G  G
Stem-loop sequence	ACCACCACUAGAAAUCGUAUUUCUACUGGCGAUUCCUUAAGAAAACCGCCAGUAGAAAUCCAUGAUUUGUAGUGGGGGUUUUCUUAAGGAACCGCCAGUAGAAAUACGAUUUGUAGUGGCGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166343.1	ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1   ||||||||||||*||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.5	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget
HI405882.1	ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1   ||||||||||||*||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.5	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238012.1	ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1   ||||||||||||*||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.5	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1   ||||||||||||*||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.5	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1   ||||||||||||*||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.5	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1   ||||||||||||*||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.5	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget