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BaseInfo

ncRNA ID novel_zma_miR5047
Species Zea mays
Class miRNA
Genome position Chr6:152931428-152931471 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 21
Mature sequence(if miRNA) 24 - AGAGGAGUGGAACGAAGAGUG - 44
Stem-loop(if miRNA) ---UUUA   G    A     AC
       UGU CUAC UUUUU  U
       ||| |||| |||||
       GCA GGUG AGGAG  A
GUGAGAA   A    -     AU
Stem-loop sequence UUUAUGUGCUACAUUUUUACUAUAGAGGAGUGGAACGAAGAGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU959765.1
ncRNA:21   GUGAGAAGCAAGGUGAGGAGA   1
  =*|||||||||||*||||||*
targets:23   UUCUCUUCGUUCCCCUCCUCG   43

2.5 Zea mays clone 219894 eukaryotic translation initiation factor 4E type 3 mRNA, complete cds NA coding protein psRNATarget
EU973689.1
ncRNA:21   GUGAGAAGCAAGGUGAGGAGA   1
  **|||||||||*||||||||*
targets:434   ACCUCUUCGUUGCACUCCUCC   454

2.5 Zea mays clone 406639 mRNA sequence NA coding protein psRNATarget