Search result

BaseInfo

ncRNA ID	novel_zma_miR5046
Species	Zea mays
Class	miRNA
Genome position	Chr5:58458839-58458914 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR5100248
Length	24
Mature sequence(if miRNA)	53 - GAUUCCUCCCACAUGGAUCCCCUU - 76
Stem-loop(if miRNA)	--GA         -  A   A          CA     A     GGAUCCAUG GG GAG AAUCCCCUUG  AUUCA U     ||||||||| || ||| ||||||||||  |||||     CCUAGGUAC CC CUC UUAGGGGAAC  UAAGU U UUCC         A  -   C          AA     U
Stem-loop sequence	GAGGAUCCAUGGGAGAGAAAUCCCCUUGCAAUUCAAUUUUGAAUAACAAGGGGAUUCCUCCCACAUGGAUCCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235127.1	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   |||||||||||||||||||||||| targets:29   AAGGGGAUCCAUGUGGGAGGAAUC   52 Target Full Sequence	0.0	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget
HI402997.1	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   |||||||||||||||||||||||| targets:29   AAGGGGAUCCAUGUGGGAGGAAUC   52 Target Full Sequence	0.0	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget
JB163458.1	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   |||||||||||||||||||||||| targets:29   AAGGGGAUCCAUGUGGGAGGAAUC   52 Target Full Sequence	0.0	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
EU974244.1	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   *||||||||||||*|||||||||| targets:419   UAGGGGAUCCAUGGGGGAGGAAUC   442 Target Full Sequence	1.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
EU967725.1	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   *||||||||||||*|||||||||| targets:1061   UAGGGGAUCCAUGGGGGAGGAAUC   1084 Target Full Sequence	1.5	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
XM_008662311.2	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   *||||||||||||*|||||||||| targets:1022   UAGGGGAUCCAUGGGGGAGGAAUC   1045 Target Full Sequence	1.5	PREDICTED: Zea mays EPIDERMAL PATTERNING FACTOR-like protein 4 (LOC103639579), mRNA	NA	coding protein	psRNATarget
BT041878.2	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   *||||||||||||*|||||||||= targets:246   UAGGGGAUCCAUGGGGGAGGAAUU   269 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148227.2	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   *||||||||||||*|||||||||= targets:246   UAGGGGAUCCAUGGGGGAGGAAUU   269 Target Full Sequence	2.5	Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA	NA	coding protein	psRNATarget
BT087775.1	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   *||||||||||||*|||||||||= targets:253   UAGGGGAUCCAUGGGGGAGGAAUU   276 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds	NA	coding protein	psRNATarget
HI408621.1	ncRNA:21   CCCUAGGUACACCCUCCUUAG   1   ||||||||||*|||||||||| targets:1   GGGAUCCAUGGGGGAGGAAUC   21 Target Full Sequence	1.5	Sequence 6746 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240751.1	ncRNA:21   CCCUAGGUACACCCUCCUUAG   1   ||||||||||*|||||||||| targets:1   GGGAUCCAUGGGGGAGGAAUC   21 Target Full Sequence	1.5	Sequence 6746 from Patent EP2985353	NA	coding protein	psRNATarget
JB169082.1	ncRNA:21   CCCUAGGUACACCCUCCUUAG   1   ||||||||||*|||||||||| targets:1   GGGAUCCAUGGGGGAGGAAUC   21 Target Full Sequence	1.5	Sequence 6746 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241389.1	ncRNA:21   CCCUAGGUACACCCUCCUUAG   1   ||||||||||*|||||||||| targets:1   GGGAUCCAUGGGGGAGGAAUC   21 Target Full Sequence	1.5	Sequence 7384 from Patent EP2985353	NA	coding protein	psRNATarget
JB169720.1	ncRNA:21   CCCUAGGUACACCCUCCUUAG   1   ||||||||||*|||||||||| targets:1   GGGAUCCAUGGGGGAGGAAUC   21 Target Full Sequence	1.5	Sequence 7384 from Patent EP2559767	NA	coding protein	psRNATarget
HI409259.1	ncRNA:21   CCCUAGGUACACCCUCCUUAG   1   ||||||||||*|||||||||| targets:1   GGGAUCCAUGGGGGAGGAAUC   21 Target Full Sequence	1.5	Sequence 7384 from Patent EP2074227	NA	coding protein	psRNATarget
EU942647.1	ncRNA:24   UUCCCCUAGGUACACCCUCCUUAG   1   =||*|||||=|||||||||*|||| targets:454   GAGUGGAUCUAUGUGGGAGCAAUC   477 Target Full Sequence	2.5	Zea mays clone 1526747 mRNA sequence	NA	coding protein	psRNATarget