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BaseInfo

ncRNA ID novel_zma_miR5042
Species Zea mays
Class miRNA
Genome position Chr6:83040174-83040222 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 24
Mature sequence(if miRNA) 1 - GGUUUGUGGGUAUGGGUAGUGGAA - 24
Stem-loop(if miRNA) --   U             AG  GA
  GGU UGUGGGUAUGGGU  UG  A
  ||| |||||||||||||  ||
  CCA GCACCCGUACCCA  AC  G
GC   U             -A  AA
Stem-loop sequence GGUUUGUGGGUAUGGGUAGUGGAAGAACAAACCCAUGCCCACGUACCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541949.1
ncRNA:24   AAGGUGAUGGGUAUGGGUGUUUGG   1
  |||||||||||||||||=||||||
targets:1998   UUCCACUACCCAUACCCGCAAACC   2021

1.5 PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100273186), transcript variant X1, mRNA NA coding protein psRNATarget