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BaseInfo

ncRNA ID novel_zma_miR5041
Species Zea mays
Class miRNA
Genome position Chr5:11305265-11305343 [-]
Reference genome RefGen_v4
Source SRR1618882;SRR2287165;SRR1618883;SRR5100255;SRR5105961;SRR5105963
Length 24
Mature sequence(if miRNA) 56 - ACUUUUCUGGCAAGUCGGUCGACU - 79
Stem-loop(if miRNA) ACUUUU       --------   GGUCGACUUGCCAGCGACUGG
      CUGGCAA        GUC                     A
      |||||||        |||                     A
      GCUGAUC        UCA                     U
------       AAGCUGGU   GCUGCUGAUCAGCUGAUUAUA
Stem-loop sequence ACUUUUCUGGCAAGUCGGUCGACUUGCCAGCGACUGGAAUAUAUUAGUCGACUAGUCGUCGACUUGGUCGAACUAGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547690.1
ncRNA:24   UCAGCUGGCUGAACGGUCUUUUCA   1
  |||||*||||||||||||||||||
targets:29   AGUCGCCCGACUUGCCAGAAAAGU   52

1.0 PREDICTED: Zea mays SNARE-like superfamily protein (IDP117), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547691.1
ncRNA:24   UCAGCUGGCUGAACGGUCUUUUCA   1
  |||||*||||||||||||||||||
targets:159   AGUCGCCCGACUUGCCAGAAAAGU   182

1.0 PREDICTED: Zea mays SNARE-like superfamily protein (IDP117), transcript variant X2, mRNA NA coding protein psRNATarget