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BaseInfo

ncRNA ID novel_zma_miR5031
Species Zea mays
Class miRNA
Genome position Chr6:151092974-151093094 [-]
Reference genome RefGen_v4
Source SRR2287164
Length 24
Mature sequence(if miRNA) 1 - AUAAAAUAAAAUGUAGGGACUAAA - 24
Stem-loop(if miRNA) --        U         CCU    AGUAUAU               A          
  UAGUCCUU UAUUUUAUU   UUUU       AAAUUGCUAAAUAUA AAACUAAAAUA
  |||||||| |||||||||   ||||       ||||||||||||||| ||||||||||A
  AUCAGGGA GUAAAAUAA   AAAA       UUUAAUGAUUUAUAU UUUGAUUUUGA
AA        U         AAU    AAAAGGU               C          
Stem-loop sequence UAGUCCUUUUAUUUUAUUCCUUUUUAGUAUAUAAAUUGCUAAAUAUAAAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUAGUAAUUUUGGAAAAAAAAUAAAAUAAAAUGUAGGGACUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402995.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||||||
targets:28   UUUAGUCCCUACAUUUUAUUUUAU   51

0.0 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
LQ235125.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||||||
targets:28   UUUAGUCCCUACAUUUUAUUUUAU   51

0.0 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
JB163456.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||||||
targets:28   UUUAGUCCCUACAUUUUAUUUUAU   51

0.0 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
EU956677.1
ncRNA:24   AA-AUCAGGGAUGUAAAAUAAAAUA   1
  ||-||||||||||||||||||||||
targets:2035   UUCUAGUCCCUACAUUUUAUUUUAU   2059

0.0 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*|||
targets:1568   UUUAGUCCCUACAUUUUAUUCUAU   1591

1.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:1665   UUUAGUCCCUUCAUUUUAUUCUAU   1688

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
BT055601.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||||||
targets:811   UUUAGUCCCUUCAUUUUAUUUUAU   834

1.0 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||||||
targets:811   UUUAGUCCCUUCAUUUUAUUUUAU   834

1.0 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
EZ060524.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*|||
targets:68   UUUAGUCCCUACAUUUUAUUCUAU   91

1.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
JB163556.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||||||||||||||||*||
targets:28   UUUAGUCCCUACAUUUUAUUUCAU   51

1.5 Sequence 1220 from Patent EP2559767 NA coding protein psRNATarget
LQ235225.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||||||||||||||||*||
targets:28   UUUAGUCCCUACAUUUUAUUUCAU   51

1.5 Sequence 1220 from Patent EP2985353 NA coding protein psRNATarget
HI403095.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||||||||||||||||*||
targets:28   UUUAGUCCCUACAUUUUAUUUCAU   51

1.5 Sequence 1220 from Patent EP2074227 NA coding protein psRNATarget
XM_008655999.2
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:1188   UUUAGUCUCUUCAUUUUAUUUUAU   1211

2.0 PREDICTED: Zea mays Protein LIKE COV 2 (LOC100191373), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001136807.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:1247   UUUAGUCUCUUCAUUUUAUUUUAU   1270

2.0 Zea mays Protein LIKE COV 2 (LOC100191373), mRNA NA coding protein psRNATarget
BT033446.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:1247   UUUAGUCUCUUCAUUUUAUUUUAU   1270

2.0 Zea mays full-length cDNA clone ZM_BFb0157F18 mRNA, complete cds NA coding protein psRNATarget
BT087555.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:1201   UUUAGUCUCUUCAUUUUAUUUUAU   1224

2.0 Zea mays full-length cDNA clone ZM_BFb0108F07 mRNA, complete cds NA coding protein psRNATarget
EU962491.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:1147   UUUAGUCUCUUCAUUUUAUUUUAU   1170

2.0 Zea mays clone 243115 mRNA sequence NA coding protein psRNATarget
BT039671.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:1087   UUUAGUCUCUUCAUUUUAUUUUAU   1110

2.0 Zea mays full-length cDNA clone ZM_BFc0037P09 mRNA, complete cds NA coding protein psRNATarget
BT088053.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:829   UUUAGUCUCUUCAUUUUAUUUUAU   852

2.0 Zea mays full-length cDNA clone ZM_BFb0380J10 mRNA, complete cds NA coding protein psRNATarget
HI406740.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:28   UUUAGUCUCUUCAUUUUAUUUUAU   51

2.0 Sequence 4865 from Patent EP2074227 NA coding protein psRNATarget
LQ238867.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:28   UUUAGUCUCUUCAUUUUAUUUUAU   51

2.0 Sequence 4862 from Patent EP2985353 NA coding protein psRNATarget
JB167198.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:28   UUUAGUCUCUUCAUUUUAUUUUAU   51

2.0 Sequence 4862 from Patent EP2559767 NA coding protein psRNATarget
HI406737.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:28   UUUAGUCUCUUCAUUUUAUUUUAU   51

2.0 Sequence 4862 from Patent EP2074227 NA coding protein psRNATarget
JB167201.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:28   UUUAGUCUCUUCAUUUUAUUUUAU   51

2.0 Sequence 4865 from Patent EP2559767 NA coding protein psRNATarget
LQ238870.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  |||||||=||*|||||||||||||
targets:28   UUUAGUCUCUUCAUUUUAUUUUAU   51

2.0 Sequence 4865 from Patent EP2985353 NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*||*
targets:3590   UUUAGUCCCUACAUUUUAUUCUAA   3613

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*||*
targets:3553   UUUAGUCCCUACAUUUUAUUCUAA   3576

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*||*
targets:3503   UUUAGUCCCUACAUUUUAUUCUAA   3526

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*||*
targets:3428   UUUAGUCCCUACAUUUUAUUCUAA   3451

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
BT018349.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*||*
targets:584   UUUAGUCCCUACAUUUUAUUCUAA   607

2.5 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
EU941753.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||||||||||||*||*
targets:29   UUUAGUCCCUACAUUUUAUUCUAA   52

2.5 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:835   UUUAGUCCCUUCAUUUUAUUCUAU   858

2.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
JB163516.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:26   UUUAGUCCCUUCAUUUUAUUCUAU   49

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:26   UUUAGUCCCUUCAUUUUAUUCUAU   49

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
HI403055.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:26   UUUAGUCCCUUCAUUUUAUUCUAU   49

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
HI403050.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:26   UUUAGUCCCUUCAUUUUAUUCUAU   49

2.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
JB163511.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:26   UUUAGUCCCUUCAUUUUAUUCUAU   49

2.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||||||||*|||||||||*|||
targets:26   UUUAGUCCCUUCAUUUUAUUCUAU   49

2.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
XM_008683103.2
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||-|||||*||||||||||*||
targets:2884   UUUA-UCCCUCCAUUUUAUUUCAU   2906

2.5 PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA NA coding protein psRNATarget
BT038140.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||-|||||*||||||||||*||
targets:885   UUUA-UCCCUCCAUUUUAUUUCAU   907

2.5 Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds NA coding protein psRNATarget
NM_001143572.1
ncRNA:24   AAAUCAGGGAUGUAAAAUAAAAUA   1
  ||||-|||||*||||||||||*||
targets:885   UUUA-UCCCUCCAUUUUAUUUCAU   907

2.5 Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA NA coding protein psRNATarget
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