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BaseInfo

ncRNA ID	novel_zma_miR5029
Species	Zea mays
Class	miRNA
Genome position	Chr5:177069198-177069335 [+]
Reference genome	RefGen_v4
Source	SRR2287164;SRR5451006
Length	24
Mature sequence(if miRNA)	115 - AGACGUUAGAUCUAAGAUGGAUAG - 138
Stem-loop(if miRNA)	--             A      A G      UUUGGUAUA  UG   AG    CCCUCCAACGUGGUGGGUUGUA   AUUCAUCUUAGAU UAACGU U UAGUUG         UU  CUA  UACA                      G   ||||||||||||| |||||| | ||||||         ||  |||  ||||                      U   UAGGUAGAAUCUA AUUGCA A AUUAAC         UA  AUA  ACAU                      G GA             G      G G      ---------  --   --    UAAAUGUUUAUUGUAGAAGGUG
Stem-loop sequence	AUUCAUCUUAGAUAUAACGUAUGUAGUUGUUUGGUAUAUUUGCUAAGUACACCCUCCAACGUGGUGGGUUGUAGUGGUGGAAGAUGUUAUUUGUAAAUUACAAUAAUCAAUUAGAGACGUUAGAUCUAAGAUGGAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU948462.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   *||*==||=||||||||||||||| targets:437   AUACUUAUUUUAGAUCUAACGUCU   460 Target Full Sequence	2.0	Zea mays clone 377988 mRNA sequence	NA	coding protein	psRNATarget
XM_008664116.2	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*==|||||||||||||||||| targets:678   CCACUUAUCUUAGAUCUAACGUCU   701 Target Full Sequence	1.0	PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||||||| targets:340   CCACUCAUUUUAGAUCUAACGUCU   363 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241673.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=|||||||||||||=| targets:18   CCACUCAUUUUAGAUCUAACGUUU   41 Target Full Sequence	2.5	Sequence 7668 from Patent EP2985353	NA	coding protein	psRNATarget
JB170004.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=|||||||||||||=| targets:18   CCACUCAUUUUAGAUCUAACGUUU   41 Target Full Sequence	2.5	Sequence 7668 from Patent EP2559767	NA	coding protein	psRNATarget
HI409543.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=|||||||||||||=| targets:18   CCACUCAUUUUAGAUCUAACGUUU   41 Target Full Sequence	2.5	Sequence 7668 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235514.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||=|||| targets:14   CCACUCAUUUUAGAUCUAAUGUCU   37 Target Full Sequence	2.5	Sequence 1509 from Patent EP2985353	NA	coding protein	psRNATarget
JB163845.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||=|||| targets:14   CCACUCAUUUUAGAUCUAAUGUCU   37 Target Full Sequence	2.5	Sequence 1509 from Patent EP2559767	NA	coding protein	psRNATarget
HI403384.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |*|*=|||=||||||||||=|||| targets:14   CCACUCAUUUUAGAUCUAAUGUCU   37 Target Full Sequence	2.5	Sequence 1509 from Patent EP2074227	NA	coding protein	psRNATarget
BT016456.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   =*|*||*||||||||||||||||| targets:43   UCACCCUUCUUAGAUCUAACGUCU   66 Target Full Sequence	1.0	Zea mays clone Contig289 mRNA sequence	NA	coding protein	psRNATarget
EZ113957.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   ||-|||||||*|||||||||*||| targets:230   CU-UCCAUCUCAGAUCUAACUUCU   252 Target Full Sequence	2.5	TSA: Zea mays contig49618, mRNA sequence	NA	coding protein	psRNATarget
EU955849.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   |***|||||||*|||||||||||* targets:1975   CCCACCAUCUUUGAUCUAACGUCA   1998 Target Full Sequence	2.5	Zea mays clone 1548842 mRNA sequence	NA	coding protein	psRNATarget
HI403418.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   **|*=|||=|||*||||||||||| targets:25   GCACUCAUUUUAAAUCUAACGUCU   48 Target Full Sequence	2.5	Sequence 1543 from Patent EP2074227	NA	coding protein	psRNATarget
JB163879.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   **|*=|||=|||*||||||||||| targets:25   GCACUCAUUUUAAAUCUAACGUCU   48 Target Full Sequence	2.5	Sequence 1543 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235548.1	ncRNA:24   GAUAGGUAGAAUCUAGAUUGCAGA   1   **|*=|||=|||*||||||||||| targets:25   GCACUCAUUUUAAAUCUAACGUCU   48 Target Full Sequence	2.5	Sequence 1543 from Patent EP2985353	NA	coding protein	psRNATarget