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BaseInfo

ncRNA ID novel_zma_miR5026
Species Zea mays
Class miRNA
Genome position Chr5:9733321-9733384 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 24
Mature sequence(if miRNA) 1 - CCUCUGUAGAGGCGUGGACGGUCC - 24
Stem-loop(if miRNA) -        -G   -       G    GC    
 CCUCUGUA  AGG CGUGGAC GUCC  GGCCA
 ||||||||  ||| ||||||| ||||  ||||G
 GGGGACAU  UCC GCGCUUG CAGG  CCGGG
C        GA   A       A    --    
Stem-loop sequence CCUCUGUAGAGGCGUGGACGGUCCGCGGCCAGGGGCCGGACAGUUCGCGACCUAGUACAGGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ080491.1
ncRNA:24   CCUGGCAGGUGCGGAGAUGUCUCC   1
  ****=*||||=||||||||||||*
targets:42   UAUGUUUCCAUGCCUCUACAGAGA   65

3.0 TSA: Zea mays contig16130, mRNA sequence NA coding protein psRNATarget