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BaseInfo

ncRNA ID novel_zma_miR5024
Species Zea mays
Class miRNA
Genome position Chr5:44474731-44474808 [+]
Reference genome RefGen_v4
Source SRR2287164;SRR4237223;SRR4237227
Length 21
Mature sequence(if miRNA) 1 - AUCACGUGAGGAUUGGAGGGG - 21
Stem-loop(if miRNA) --      U A                          GA
  AUCACG G GGAUUGGAGGGGAUUGAGGGGGAAAU  A
  |||||| | ||||||||||||||||||||||||||
  UAGUGU C CCUAACUUUCCCUAACUCCCCCUUUA  C
CC      C C                          AU
Stem-loop sequence AUCACGUGAGGAUUGGAGGGGAUUGAGGGGGAAAUGAACUAAUUUCCCCCUCAAUCCCUUUCAAUCCCCCUGUGAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163954.1
ncRNA:21   GGGGAGGUUAGGAGUGCACUA   1
  ||||||||||||||*||||||
targets:43   CCCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
HI403493.1
ncRNA:21   GGGGAGGUUAGGAGUGCACUA   1
  ||||||||||||||*||||||
targets:43   CCCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:21   GGGGAGGUUAGGAGUGCACUA   1
  ||||||||||||||*||||||
targets:43   CCCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget