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BaseInfo

ncRNA ID novel_zma_miR5021
Species Zea mays
Class miRNA
Genome position Chr5:51212721-51212866 [-]
Reference genome RefGen_v4
Source SRR1618882
Length 24
Mature sequence(if miRNA) 123 - CUCCCUCCAUUCCAAAUUAUAAGU - 146
Stem-loop(if miRNA) --                     AG UG   C  UUUUU   A      C      G     C          
  CUCCCUCCAUUCCAAAUUAUA  U  CUU AA     UUU GUACAU GAGUUU CUAUG AUCUAGAUAUA
  |||||||||||||||||||||  |  ||| ||     ||| |||||| |||||| ||||| ||||||||||A
  GAGGGAGGUGAGGUUUAAUAU  A  GAA UU     AAA CAUGUA CUUAAA GAUGU UAGAUCUGUAC
AU                     CU GA   A  UGUUU   -      A      A     U          
Stem-loop sequence CUCCCUCCAUUCCAAAUUAUAAGUUGCUUCAAUUUUUUUUAGUACAUCGAGUUUGCUAUGCAUCUAGAUAUAACAUGUCUAGAUUUGUAGAAAAUUCAAUGUACAAAUUUGUUUAAAGAGAUCUAUAAUUUGGAGUGGAGGGAGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542673.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  ||*|||||||||||||||||||||
targets:364   ACAUAUAAUUUGGAAUGGAGGGAG   387

0.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM50-like (LOC103635196), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008656073.2
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  ||*|||||||||||||||||||||
targets:1361   ACAUAUAAUUUGGAAUGGAGGGAG   1384

0.0 PREDICTED: Zea mays import inner membrane translocase subunit TIM50 (LOC100192475), transcript variant X1, mRNA NA coding protein psRNATarget
BT066991.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  ||*|||||||||||||||||||||
targets:692   ACCUAUAAUUUGGAAUGGAGGGAG   715

0.0 Zea mays full-length cDNA clone ZM_BFb0138L04 mRNA, complete cds NA coding protein psRNATarget
XM_008679355.2
ncRNA:24   UGA-AUAUUAAACCUUACCUCCCUC   1
  |||-|=|||||||||||||||||||
targets:2590   ACUAUGUAAUUUGGAAUGGAGGGAG   2614

0.0 PREDICTED: Zea mays uncharacterized LOC100382601 (LOC100382601), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547060.1
ncRNA:24   UG-AAUAUUAAACCUUACCUCCCUC   1
  ||-||||||*|||||||||||||||
targets:2166   ACAUUAUAACUUGGAAUGGAGGGAG   2190

1.0 PREDICTED: Zea mays actin cytoskeleton-regulatory complex protein PAN1 (LOC103644347), transcript variant X4, mRNA NA coding protein psRNATarget
BT039099.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  *|||=*||||||||||||||||||
targets:970   UCUUGCAAUUUGGAAUGGAGGGAG   993

1.0 Zea mays full-length cDNA clone ZM_BFb0370L15 mRNA, complete cds NA coding protein psRNATarget
XM_020551242.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  *|||=||*||||||||||||||||
targets:2766   UCUUGUACUUUGGAAUGGAGGGAG   2789

1.0 PREDICTED: Zea mays transcription factor GTE4 (LOC103649581), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008666957.2
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  ||*||||||*||||||||||||||
targets:1041   ACAUAUAAUCUGGAAUGGAGGGAG   1064

1.0 PREDICTED: Zea mays fiber protein Fb38 (LOC100216806), transcript variant X3, mRNA NA coding protein psRNATarget
EU956616.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |||||*|||||||||*||||||||
targets:2017   ACUUACAAUUUGGAAGGGAGGGAG   2040

2.5 Zea mays clone 1568188 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149598.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |||||*|||||||||*||||||||
targets:2017   ACUUACAAUUUGGAAGGGAGGGAG   2040

2.5 Zea mays hypothetical protein (cl2814_1a), mRNA NA coding protein psRNATarget
EZ109508.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |*|*||=|||||||||||||||||
targets:173   AGUCAUGAUUUGGAAUGGAGGGAG   196

1.0 TSA: Zea mays contig45167, mRNA sequence NA coding protein psRNATarget
NM_001175293.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |*|*||=|||||||||||||||||
targets:1415   AGUCAUGAUUUGGAAUGGAGGGAG   1438

1.0 Zea mays uncharacterized LOC100276357 (LOC100276357), mRNA NA coding protein psRNATarget
BT064755.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |*|*||=|||||||||||||||||
targets:1415   AGUCAUGAUUUGGAAUGGAGGGAG   1438

1.0 Zea mays full-length cDNA clone ZM_BFb0114E15 mRNA, complete cds NA coding protein psRNATarget
NM_001199610.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |||-|||*||||||||||||||||
targets:1942   ACU-AUAUUUUGGAAUGGAGGGAG   1964

1.0 Zea mays pentatricopeptide repeat protein (LOC100527940), mRNA NA coding protein psRNATarget
HQ534069.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |||-|||*||||||||||||||||
targets:1942   ACU-AUAUUUUGGAAUGGAGGGAG   1964

1.0 Zea mays pentatricopeptide repeat protein mRNA, complete cds NA coding protein psRNATarget
XM_008675343.2
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  **||=||||||||||||||*||||
targets:1775   UAUUGUAAUUUGGAAUGGAAGGAG   1798

1.5 PREDICTED: Zea mays lecithin-cholesterol acyltransferase-like 1 (LOC103649606), mRNA NA coding protein psRNATarget
EZ062774.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  *|||*|||*|||||||||||||||
targets:668   UCUUUUAAGUUGGAAUGGAGGGAG   691

1.0 TSA: Zea mays contig63896, mRNA sequence NA coding protein psRNATarget
XM_008654306.2
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  *|||*|||*|||||||||||||||
targets:3366   UCUUUUAAGUUGGAAUGGAGGGAG   3389

1.0 PREDICTED: Zea mays flowering time control protein FPA (LOC100383418), transcript variant X1, mRNA NA coding protein psRNATarget
EU953520.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  ||||*||*||||||||*|||||||
targets:7   ACUUCUAUUUUGGAAUAGAGGGAG   30

2.5 Zea mays clone 1430111 ferredoxin mRNA, complete cds NA coding protein psRNATarget
BT067948.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |=||-||*|||||=||||||||||
targets:1799   AUUU-UAUUUUGGGAUGGAGGGAG   1821

2.5 Zea mays full-length cDNA clone ZM_BFb0011B23 mRNA, complete cds NA coding protein psRNATarget
NM_001176292.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |=||-||*|||||=||||||||||
targets:1799   AUUU-UAUUUUGGGAUGGAGGGAG   1821

2.5 Zea mays uncharacterized LOC100383647 (LOC100383647), mRNA NA coding protein psRNATarget
XM_008676757.2
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  ||*||*|||||||||||*||||||
targets:276   ACCUACAAUUUGGAAUGCAGGGAG   299

2.5 PREDICTED: Zea mays inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2-like (LOC103651148), transcript variant X4, mRNA NA coding protein psRNATarget
NM_001154248.2
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |*||=||*||||||||*|||||||
targets:1653   AAUUGUAUUUUGGAAUAGAGGGAG   1676

2.5 Zea mays serine/threonine-protein kinase Cx32 (LOC100281330), mRNA NA coding protein psRNATarget
EU956368.1
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |*||=||*||||||||*|||||||
targets:1654   AAUUGUAUUUUGGAAUAGAGGGAG   1677

2.5 Zea mays clone 1561407 serine/threonine-protein kinase Cx32 mRNA, complete cds NA coding protein psRNATarget
XM_008667571.2
ncRNA:24   UGAAUAUUAAACCUUACCUCCCUC   1
  |=**=|||||||||||||||||=*
targets:2190   AUCCGUAAUUUGGAAUGGAGGGGA   2213

2.5 PREDICTED: Zea mays uncharacterized LOC100384298 (LOC100384298), transcript variant X1, mRNA NA coding protein psRNATarget
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