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BaseInfo

ncRNA ID novel_zma_miR5017
Species Zea mays
Class miRNA
Genome position Chr5:166022387-166022473 [-]
Reference genome RefGen_v4
Source SRR2287164
Length 24
Mature sequence(if miRNA) 1 - AGUUGGCUCUCGGCAAAGACUGAC - 24
Stem-loop(if miRNA) --  CG          U   U   AUG              GAA
  CA  CUUUGCCGAG GCC ACU   UGGCACUCGGCAAA   U
  ||  |||||||||| ||| |||   ||||||||||||||
  GU  GAAACGGCUC CGG UGA   ACCGUGAGCCGUUU   C
CA  CA          U   U   -CG              AUC
Stem-loop sequence CACGCUUUGCCGAGUGCCUACUAUGUGGCACUCGGCAAAGAAUCCUAUUUGCCGAGUGCCAGCAGUUGGCUCUCGGCAAAGACUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT063684.1
ncRNA:24   CAGUCAGAAACGGCUCUCGGUUGA   1
  |||||||||||||||||||||||*
targets:1246   GUCAGUCUUUGCCGAGAGCCAACG   1269

1.0 Zea mays full-length cDNA clone ZM_BFc0094N19 mRNA, complete cds NA coding protein psRNATarget
NM_001175015.1
ncRNA:24   CAGUCAGAAACGGCUCUCGGUUGA   1
  |||||||||||||||||||||||*
targets:1246   GUCAGUCUUUGCCGAGAGCCAACG   1269

1.0 Zea mays uncharacterized LOC100382263 (LOC100382263), mRNA NA coding protein psRNATarget