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BaseInfo

ncRNA ID	novel_zma_miR5016
Species	Zea mays
Class	miRNA
Genome position	Chr5:69449190-69449268 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR5100255
Length	24
Mature sequence(if miRNA)	56 - AAAAGCACUCGGCAAAGAACUCUU - 79
Stem-loop(if miRNA)	A            A     -               CAAA  AAAGCACUCGGC AAGAA CUCUUUGCCGAGUGU    A  |||||||||||| ||||| |||||||||||||||  UUUUGUGAGCCG UUCUU GAGAAAUGGCUCACA    A C            C     C               AAAU
Stem-loop sequence	AAAAGCACUCGGCAAAGAACUCUUUGCCGAGUGUCAAAAAUAAAACACUCGGUAAAGAGCUUCUUCGCCGAGUGUUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949560.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   |||=|||||||||||||||=|||| targets:588   AAGGGUUCUUUGCCGAGUGUUUUU   611 Target Full Sequence	1.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   |||||*|||||||||||||=|||| targets:103   AAGAGCUCUUUGCCGAGUGUUUUU   126 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   |||||*|||||||||||||=|||| targets:103   AAGAGCUCUUUGCCGAGUGUUUUU   126 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   |||||*|||||||||||||=|||| targets:103   AAGAGCUCUUUGCCGAGUGUUUUU   126 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239383.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   |||**|||||||||||||*||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
JB167714.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   |||**|||||||||||||*||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget
HI407253.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   |||**|||||||||||||*||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   UUCUCAAGAAACGGCUCACG-AAAA   1   **|=*|||||||||||||||-|||| targets:49   UUGGCUUCUUUGCCGAGUGCCUUUU   73 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   UUCUCAAGAAACGGCUCACG-AAAA   1   **|=*|||||||||||||||-|||| targets:1148   UUGGCUUCUUUGCCGAGUGCCUUUU   1172 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UUCUCAAGAAACGGCUCACG-AAAA   1   **|=*|||||||||||||||-|||| targets:1285   UUGGCUUCUUUGCCGAGUGCCUUUU   1309 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UUCUCAAGAAACGGCUCACG-AAAA   1   **|=*|||||||||||||||-|||| targets:1285   UUGGCUUCUUUGCCGAGUGCCUUUU   1309 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
LQ239198.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   *=||-||||||||||||||||*|* targets:46   CGGA-UUCUUUGCCGAGUGCUGUC   68 Target Full Sequence	2.5	Sequence 5193 from Patent EP2985353	NA	coding protein	psRNATarget
HI407068.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   *=||-||||||||||||||||*|* targets:46   CGGA-UUCUUUGCCGAGUGCUGUC   68 Target Full Sequence	2.5	Sequence 5193 from Patent EP2074227	NA	coding protein	psRNATarget
JB167529.1	ncRNA:24   UUCUCAAGAAACGGCUCACGAAAA   1   *=||-||||||||||||||||*|* targets:46   CGGA-UUCUUUGCCGAGUGCUGUC   68 Target Full Sequence	2.5	Sequence 5193 from Patent EP2559767	NA	coding protein	psRNATarget