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BaseInfo

ncRNA ID	novel_zma_miR5009
Species	Zea mays
Class	miRNA
Genome position	Chr5:186109580-186109691 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	1 - AAUCUUGGAUUGGAGUGGAUUAAG - 24
Stem-loop(if miRNA)	--AAUCUU                    A    --A   U U       U UA U  GA         GGAUUGGAGUGGAUUAAGGU GUAU   AGG G AUUGAAG G  A AU  A         |||||||||||||||||||| ||||   ||| | ||||||| |  | ||         CCUAACUUCAUCUAAUUUUA CAUA   UCC C UAACUUU C  U UA  C UAUUUUUC                    -    AAA   - -       - CC U  AU
Stem-loop sequence	AAUCUUGGAUUGGAGUGGAUUAAGGUAGUAUAAGGUGUAUUGAAGUGUAAUAUGAACUAAUUUCCCUUUCAAUCCCUAAAAUACAUUUUAAUCUACUUCAAUCCCUUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008667020.2	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ||*||||||||||||||||||||| targets:2085   CUCAAUCCACUCCAAUCCAAGAUU   2108 Target Full Sequence	0.0	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ||*||||||||||||||||||||| targets:1116   CUCAAUCCACUCCAAUCCAAGAUU   1139 Target Full Sequence	0.0	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
EU943240.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ||*||||||||||||||||||||| targets:578   CUCAAUCCACUCCAAUCCAAGAUU   601 Target Full Sequence	0.0	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ||*|||||||||||||||=||||| targets:91   CUCAAUCCACUCCAAUCCGAGAUU   114 Target Full Sequence	1.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ||*|||||||||||||||=||||| targets:91   CUCAAUCCACUCCAAUCCGAGAUU   114 Target Full Sequence	1.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ||*|||||||||||||||=||||| targets:91   CUCAAUCCACUCCAAUCCGAGAUU   114 Target Full Sequence	1.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
BT063824.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ***=|*|||=|||||||||||||| targets:265   GCCGAGCCAUUCCAAUCCAAGAUU   288 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0110G15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175053.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ***=|*|||=|||||||||||||| targets:265   GCCGAGCCAUUCCAAUCCAAGAUU   288 Target Full Sequence	2.0	Zea mays protein binding protein (LOC100281740), mRNA	NA	coding protein	psRNATarget
EU957720.1	ncRNA:24   GAAUUAGGUGAGGUUAGGUUCUAA   1   ***=|*|||=|||||||||||||| targets:202   GCCGAGCCAUUCCAAUCCAAGAUU   225 Target Full Sequence	2.0	Zea mays clone 1612832 protein binding protein mRNA, complete cds	NA	coding protein	psRNATarget