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BaseInfo

ncRNA ID novel_zma_miR5007
Species Zea mays
Class miRNA
Genome position Chr4:172999968-173000072 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 21
Mature sequence(if miRNA) 1 - AGGUGGUCGGUUUGGAAGGGU - 21
Stem-loop(if miRNA) --                         A  GA  CACUAAAGAUGGAAAUGUCU
  AGGUGGUCGGUUUGGAAGGGUGUAC AG  AA                    C
  ||||||||||||||||||||||||| ||  ||
  UCCACCAGCCAAACCUUCCCACAUG UU  CG                    A
UA                         -  --  AAAGUGAAAACUCUCUUGUG
Stem-loop sequence AGGUGGUCGGUUUGGAAGGGUGUACAAGGAAACACUAAAGAUGGAAAUGUCUCAGUGUUCUCUCAAAAGUGAAAGCUUGUACACCCUUCCAAACCGACCACCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ079115.1
ncRNA:21   UGGGAAGGUUUGGCUGGUGGA   1
  *=|||||||||||||||||=*
targets:91   UUCCUUCCAAACCGACCACUA   111

2.5 TSA: Zea mays contig14754, mRNA sequence NA coding protein psRNATarget