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BaseInfo

ncRNA ID novel_zma_miR5006
Species Zea mays
Class miRNA
Genome position Chr5:158773941-158773991 [-]
Reference genome RefGen_v4
Source SRR1618882;SRR4237220
Length 24
Mature sequence(if miRNA) 1 - AAGAGUAGAAUAGAGCGGAGCUGC - 24
Stem-loop(if miRNA) --  AG            UUG   GG
  AG  CCGCUCUAUUUU   UUU  U
  ||  ||||||||||||   |||
  UC  GGCGAGAUAAGA   AGA  U
CG  GA            -UG   AU
Stem-loop sequence AGAGCCGCUCUAUUUUUUGUUUGGUUUAAGAGUAGAAUAGAGCGGAGCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU945197.1
ncRNA:24   CGUCGAGGCGAGAUAAGAUGAGAA   1
  ||=|||||||||||||||||||||
targets:101   GCGGCUCCGCUCUAUUCUACUCUU   124

0.0 Zea mays clone 244184 mRNA sequence NA coding protein psRNATarget
BT084215.2
ncRNA:24   CGUCGAGGCGAGAUAAGAUGAGAA   1
  ||=*||||*|||||||||||||||
targets:1033   GCGACUCCACUCUAUUCUACUCUU   1056

1.0 Zea mays full-length cDNA clone ZM_BFb0090B20 mRNA, complete cds NA coding protein psRNATarget