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BaseInfo

ncRNA ID	novel_zma_miR5003
Species	Zea mays
Class	miRNA
Genome position	Chr4:12226026-12226146 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	98 - AAGGUAUGUGUGGUUUGGUGGUUA - 121
Stem-loop(if miRNA)	--    A       G          ----CU     UU         ----U     AUA   GU   GCCA CAGAUCA GCAUGCUUUG      ACGAU  UUAUAUUUA     AUAUC   UAA  A   |||| ||||||| ||||||||||      |||||  |||||||||     |||||   |||  G   UGGU GUUUGGU UGUAUGGAAU      UGUUA  AAUAUAAAU     UAUAG   AUU  G AU    G       G          CACAUU     UU         UUAUU     --G   AU
Stem-loop sequence	GCCAACAGAUCAGGCAUGCUUUGCUACGAUUUUUAUAUUUAUAUAUCAUAUAAGUAGGUAUUAGGAUAUUUAUUUAAAUAUAAUUAUUGUUUACACUAAGGUAUGUGUGGUUUGGUGGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552695.1	ncRNA:24   AUUGGUGGUUUGGUGUGUAUGGAA   1   **|||||||=|||||||||||||| targets:5067   CCACCACCAGACCACACAUACCUU   5090 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_008680903.2	ncRNA:24   AUUGGUGGUUUGGUGUGUAUGGAA   1   **|||||||=|||||||||||||| targets:5185   CCACCACCAGACCACACAUACCUU   5208 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964450.1	ncRNA:24   AUUGGUGGUUUGGUGUGUAUGGAA   1   ||**||=|||||||*||||||||| targets:1118   UAUGCAUCAAACCAAACAUACCUU   1141 Target Full Sequence	2.5	Zea mays clone 278961 pectinesterase inhibitor domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget