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BaseInfo

ncRNA ID novel_zma_miR5002
Species Zea mays
Class miRNA
Genome position Chr4:11121617-11121780 [+]
Reference genome RefGen_v4
Source SRR2287164;SRR5451006;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - AAGGAACUGCAAGUGGAAAUAUAU - 24
Stem-loop(if miRNA) --         CA          U   UU                                     AA  UAUUU        G
  AAGGAACUG  AGUGGAAAUA AUU  CAUUGGCGGUUCUCUUUACACAAUCGCUAGUGAAAAU  AG     UUAUUGGU G
  |||||||||  |||||||||| |||  |||||||||||||||||||||||||||||||||||||  ||     |||||||| U
  UUCUUUGGC  UCACCUUUGU UAA  GUGAUCGUCAAGAGAAGUGUGUUGGCGGUCACUUUUA  UC     AAUAGCCA U
AA         AG          U   GG                                     -A  ----U        G
Stem-loop sequence AAGGAACUGCAAGUGGAAAUAUAUUUUCAUUGGCGGUUCUCUUUACACAAUCGCUAGUGAAAAUAAAGUAUUUUUAUUGGUGGUUGACCGAUAAUCUAAUUUUCACUGGCGGUUGUGUGAAGAGAACUGCUAGUGGGAAUUUGUUUCCACUGACGGUUUCUUAA