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BaseInfo

ncRNA ID	novel_zma_miR4993
Species	Zea mays
Class	miRNA
Genome position	Chr4:55469709-55469790 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	59 - GGAGGGGAUUAGAGGGGCUAAAAU - 82
Stem-loop(if miRNA)	--          A                  G   A    A   GGAGGGGAUU GAGGGGCUAAAAUCCCUU CUU UUCA A   |||||||||| |||||||||||||||||| ||| ||||   CCUCCCCUAA CUCCCCGAUUUUAGGGGA GAA AAGU A GG          C                  G   A    U
Stem-loop sequence	GGAGGGGAUUAGAGGGGCUAAAAUCCCUUGCUUAUUCAAAAUUGAAAAAGGAGGGGAUUUUAGCCCCUCCAAUCCCCUCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405820.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   |||||||||||||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	0.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
JB166281.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   |||||||||||||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	0.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   |||||||||||||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	0.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   |||||||||||||*|||||||||| targets:3496   AUUUUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   |||||||||||||*|||||||||| targets:3531   AUUUUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   ||||||*||||||*|||||||||| targets:680   AUUUUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   ||||||*||||||*|||||||||| targets:1560   AUUUUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   ||||||*||||||*|||||||||| targets:1580   AUUUUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   ||||||*||||||*|||||||||| targets:1604   AUUUUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   ||||||*||||||*|||||||||| targets:1637   AUUUUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT017648.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   ||||*||||=|||*|||||||||| targets:163   AUUUAAGCCUCUCCAAUCCCCUCC   186 Target Full Sequence	2.5	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   ***||||||||||*|||||||||= targets:328   UGCUUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   UAAAAUCGGGGAGAUUAGGGGAGG   1   |*||||*||||||*|||||||||| targets:1027   ACUUUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget