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BaseInfo

ncRNA ID	novel_zma_miR4990
Species	Zea mays
Class	miRNA
Genome position	Chr4:67487868-67487945 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	21
Mature sequence(if miRNA)	58 - AUCGAAAGGGAUUGGAGGGGA - 78
Stem-loop(if miRNA)	--      A       GA               CC AUU   AUCGAA GGGAUUG  GGGGAUUAAAUCCCU  C   U   |||||| |||||||  |||||||||||||||  |   UAGCUU CCCUAAC  CCCCUAAUUUAGGGG  G   A CC      C       UC               AA AUA
Stem-loop sequence	AUCGAAAGGGAUUGGAGGGGAUUAAAUCCCUCCCAUUUAAUAGAAGGGGAUUUAAUCCCCCUCAAUCCCCUUCGAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054119.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   |||||||=||||=|||||||| targets:443   UCCCCUCUAAUCUCUUUCGAU   463 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066452.2	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   ||=|||==||||||||||||| targets:3   UCUCCUUUAAUCCCUUUCGAU   23 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0173L17 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   ||=|||||||||||*|||||| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   ||=|||||||||||*|||||| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   ||=|||||||||||*|||||| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   ||=|||||||||||*|||||| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   ||=|||||||||||*|||||| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   ||=|||||||||||*|||||| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
AY106606.2	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   |=|||||=||||||*|||||| targets:504   UUCCCUCUAAUCCCCUUCGAU   524 Target Full Sequence	2.5	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
BT085493.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   |=|||||=||||||*|||||| targets:784   UUCCCUCUAAUCCCCUUCGAU   804 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
EZ098882.1	ncRNA:21   AGGGGAGGUUAGGGAAAGCUA   1   **=|||||||||=|||||||| targets:24   AAUCCUCCAAUCUCUUUCGAU   44 Target Full Sequence	2.5	TSA: Zea mays contig34537, mRNA sequence	NA	coding protein	psRNATarget