Search result

BaseInfo

ncRNA ID	novel_zma_miR4989
Species	Zea mays
Class	miRNA
Genome position	Chr4:73974065-73974156 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	69 - AGAGCUUGUUCGGUUACACCAAUC - 92
Stem-loop(if miRNA)	--  A  U                                  A  A   AG GC UGUUCGGUUACACCAAUCCAGGAGGGGAUUGGAG GG U   || || |||||||||||||||||||||||||||||||||| || U   UC CG ACAAGCCAAUGUGGUUAGGUUCUCCCCUAACCUC CC A AA  C  U                                  -  C
Stem-loop sequence	AGAGCUUGUUCGGUUACACCAAUCCAGGAGGGGAUUGGAGAGGAUUACCCCUCCAAUCCCCUCUUGGAUUGGUGUAACCGAACAUGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |||||||||||||||||||||*|| targets:4818   GAUUGGUGUAACCGAACAAGCCCU   4841 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |||||||||||||||||||||*|| targets:5045   GAUUGGUGUAACCGAACAAGCCCU   5068 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |||||*|||||||||||||||*|| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |||||*|||||||||||||||*|| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |||||*|||||||||||||||*|| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |||*|||||||||||||||||*|| targets:1584   GAUCGGUGUAACCGAACAAGCCCU   1607 Target Full Sequence	1.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
EU949284.1	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |=||*|*||||||||||||||*|| targets:659   GGUUAGCGUAACCGAACAAGCCCU   682 Target Full Sequence	2.5	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:24   CUAACCACAUUGGCUUGUUCGAGA   1   |=||*|*||||||||||||||*|| targets:759   GGUUAGCGUAACCGAACAAGCCCU   782 Target Full Sequence	2.5	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget