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BaseInfo

ncRNA ID novel_zma_miR4982
Species Zea mays
Class miRNA
Genome position Chr10:8637250-8637432 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 24
Mature sequence(if miRNA) 1 - AACUUUCUAGAGGCGGCCGUAGGA - 24
Stem-loop(if miRNA) --         G   C                        G           C  - C   UC            UUUUA   GC     UGC
  AACUUUCUA AGG GGCCGUAGGAAGUUAGCAUGGGCA CUAACUUCCUA GG C UCC  UAGGAAGUUAGC     GUU  UGAUC   G
  ||||||||| ||| |||||||||||||||||||||||| ||||||||||| || | |||  ||||||||||||     |||  |||||   G
  UUGAAGGAU UCC CCGGCAUCCUUCAAUCGUACCUGU GAUUGAAGGAU UC G AGG  AUCCUUCAAUCG     CAA  ACUGG   G
GA         A   U                        A           C  A C   -C            CCGAG   --     UGU
Stem-loop sequence AACUUUCUAGAGGCGGCCGUAGGAAGUUAGCAUGGGCAGCUAACUUCCUACGGCCUCCUCUAGGAAGUUAGCUUUUAGUUGCUGAUCUGCGGGUGUGGUCAAACGAGCCGCUAACUUCCUACGGACGACUCUAGGAAGUUAGAUGUCCAUGCUAACUUCCUACGGCCUCCUAUAGGAAGUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   AGGAUGCCGGCGGAGAUCUUUCAA   1
  |=||||||||*|||||||||||||
targets:1137   UUCUACGGCCUCCUCUAGAAAGUU   1160

1.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget