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BaseInfo

ncRNA ID novel_zma_miR4973
Species Zea mays
Class miRNA
Genome position Chr4:204346573-204346643 [+]
Reference genome RefGen_v4
Source SRR1618882;SRR1618883;SRR1743455;SRR1745812;SRR3341905;SRR4237220;SRR4237222;SRR5099742;SRR5100248;SRR5100255;SRR5105961
Length 24
Mature sequence(if miRNA) 48 - GAGGAGUGUAGACUGCCCCCGCCU - 71
Stem-loop(if miRNA) --                  G  - C      -A  U
  GCGGGGGCAGUCUACACU CC C CUUAAU  GU A
  |||||||||||||||||| || | ||||||  ||
  CGCCCCCGUCAGAUGUGA GG G GAAUUA  CA G
UC                  -  A A      GA  U
Stem-loop sequence GCGGGGGCAGUCUACACUGCCCCCUUAAUAGUUAGUACAGAUUAAGAGAGGAGUGUAGACUGCCCCCGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008668277.1
ncRNA:24   UCCGCCCCCGUCAGAUGUGAGGAG   1
  |*||||||||||||||||*|||||
targets:720   AAGCGGGGGCAGUCUACAGUCCUC   743

1.5 PREDICTED: Zea mays transcription factor TCP8 (LOC103645168), mRNA NA coding protein psRNATarget
XM_008652445.1
ncRNA:24   UCCGCCCCCGUCAGAUGUGAGGAG   1
  |*||||||||||||||||*|||||
targets:720   AAGCGGGGGCAGUCUACAGUCCUC   743

1.5 PREDICTED: Zea mays transcription factor TCP8-like (LOC103631563), mRNA NA coding protein psRNATarget
XM_008678155.1
ncRNA:24   UCCGCCCCCGUCAGAUGUGAGGAG   1
  |*||||||||||||||||*|||||
targets:720   AAGCGGGGGCAGUCUACAGUCCUC   743

1.5 PREDICTED: Zea mays transcription factor TCP8-like (LOC103652607), mRNA NA coding protein psRNATarget
EZ108625.1
ncRNA:20   CCCCCGUCAGAUGUGAGGAG   1
  ||||||||||||||||*|||
targets:1   GGGGGCAGUCUACACUGCUC   20

1.5 TSA: Zea mays contig44284, mRNA sequence NA coding protein psRNATarget