Search result

BaseInfo

ncRNA ID	novel_zma_miR4970
Species	Zea mays
Class	miRNA
Genome position	Chr10:145592397-145592470 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR1618883;SRR3341856
Length	21
Mature sequence(if miRNA)	1 - UUUCUCCCCAUGGAUCCCCUU - 21
Stem-loop(if miRNA)	--GA        A A              UU   CAA     GGAUCCAU G GAGGAAUCUCCUUG  AUU   A     |||||||| | ||||||||||||||  |||     CCUAGGUA C CUCUUUAGGGGAAU  UAA   A UUCC        C C              GU   AUU
Stem-loop sequence	GAGGAUCCAUAGAGAGGAAUCUCCUUGUUAUUCAAAAUUAAAUUGUAAGGGGAUUUCUCCCCAUGGAUCCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235077.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||||||||||||||||||| targets:35   GAGGGGAUCCAUGGGGAGAAA   55 Target Full Sequence	0.0	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
JB163408.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||||||||||||||||||| targets:35   GAGGGGAUCCAUGGGGAGAAA   55 Target Full Sequence	0.0	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
HI402947.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||||||||||||||||||| targets:35   GAGGGGAUCCAUGGGGAGAAA   55 Target Full Sequence	0.0	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   *|||||||||||||||||=|| targets:89   UAGGGGAUCCAUGGGGAGGAA   109 Target Full Sequence	1.5	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   *|||||||||||||||||=|| targets:796   UAGGGGAUCCAUGGGGAGGAA   816 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT087480.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   *|||||||||||||||||=|| targets:796   UAGGGGAUCCAUGGGGAGGAA   816 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
BT085386.2	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =*||||=||||||||||*||| targets:307   GUGGGGGUCCAUGGGGACAAA   327 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0005P17 mRNA, complete cds	NA	coding protein	psRNATarget
KT947127.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||*||*||||||||||||* targets:697   GAGGCGAACCAUGGGGAGAAC   717 Target Full Sequence	3.0	Zea mays BURP5 mRNA, complete cds	NA	coding protein	psRNATarget
BT067244.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||*||*||||||||||||* targets:710   GAGGCGAACCAUGGGGAGAAC   730 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0337E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT054531.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||*||*||||||||||||* targets:701   GAGGCGAACCAUGGGGAGAAC   721 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0140K04 mRNA, complete cds	NA	coding protein	psRNATarget
BT066770.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||*||*||||||||||||* targets:709   GAGGCGAACCAUGGGGAGAAC   729 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0071D15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152591.1	ncRNA:21   UUCCCCUAGGUACCCCUCUUU   1   =|||*||*||||||||||||* targets:709   GAGGCGAACCAUGGGGAGAAC   729 Target Full Sequence	3.0	Zea mays Polygalacturonase 1 beta-like protein 3 (umc1451), mRNA	NA	coding protein	psRNATarget