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BaseInfo

ncRNA ID	novel_zma_miR4960
Species	Zea mays
Class	miRNA
Genome position	Chr3:150632933-150633074 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AGCCCCAGCCAGGAGGUCGAUCGG - 24
Stem-loop(if miRNA)	--     C   G      CU       C    G UAU               -  -UAAUAUACAA      U   GAUUG ACU CCUGGC  GGGCUUC UUUA U   UGGAAGCCCAGGGCU CC           UCUAUA A   ||||| ||| ||||||  ||||||| |||| |   ||||||||||||||| ||           ||||||   CUAGC UGG GGACCG  CCCGAAG AGGU A   GCCUUCGGGUCCCGA GG           GGAUAU U GG     -   A      AC       C    G -UU               A  UAAAGGAGAAG      A
Stem-loop sequence	GAUUGCACUGCCUGGCCUGGGCUUCCUUUAGUUAUUGGAAGCCCAGGGCUCCUAAUAUACAAUCUAUAUAUAUAUAGGGAAGAGGAAAUGGAAGCCCUGGGCUUCCGUUAGUGGACGAAGCCCCAGCCAGGAGGUCGAUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KU512879.1	ncRNA:24   GGCU--AGCUGGAGGACCGACCCCGA   1   =||=--|||=||||||||||*||||| targets:454   UCGGCCUCGGCCUCCUGGCUCGGGCU   479 Target Full Sequence	2.5	Zea mays TIFY28 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157328.1	ncRNA:24   GGCU--AGCUGGAGGACCGACCCCGA   1   =||=--|||=||||||||||*||||| targets:574   UCGGCCUCGGCCUCCUGGCUCGGGCU   599 Target Full Sequence	2.5	Zea mays ZIM motif family protein (ZIM4), mRNA	NA	coding protein	psRNATarget
EU968325.1	ncRNA:24   GGCU--AGCUGGAGGACCGACCCCGA   1   =||=--|||=||||||||||*||||| targets:574   UCGGCCUCGGCCUCCUGGCUCGGGCU   599 Target Full Sequence	2.5	Zea mays clone 318894 ZIM motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ106239.1	ncRNA:23   GCU--AGCUGGAGGACCGACCCCGA   1   ||=--|||=||||||||||*||||| targets:1   CGGCCUCGGCCUCCUGGCUCGGGCU   25 Target Full Sequence	2.5	TSA: Zea mays contig41897, mRNA sequence	NA	coding protein	psRNATarget