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BaseInfo

ncRNA ID novel_zma_miR4956
Species Zea mays
Class miRNA
Genome position Chr3:185554977-185555126 [-]
Reference genome RefGen_v4
Source SRR2287163
Length 24
Mature sequence(if miRNA) 1 - GCAUCGGACUGUCUGGUGUGCCAA - 24
Stem-loop(if miRNA) --            U         GC         GU        --CACC  -    AAU A       CUG   AG
  GGCGCACCGGAU GUCUGAUGU  CACCGGACA  GUCCGGUG      AG GGAG   C CUCUGAA   CCC  C
  |||||||||||| |||||||||  |||||||||  ||||||||      || ||||   | |||||||   |||
  CCGUGUGGUCUG CAGGCUACG  GUGGUCUGU  CAGGCCAC      UC CCUC   G GGGGCUU   GGG  U
AA            U         AU         --        UUAAUA  G    CCC A       -AA   CU
Stem-loop sequence GGCGCACCGGAUUGUCUGAUGUGCCACCGGACAGUGUCCGGUGCACCAGGGAGAAUCACUCUGAACUGCCCAGCUUCGGGAAUUCGGGGAGCCCCUCCGCUAUAAUUCACCGGACUGUCUGGUGUAGCAUCGGACUGUCUGGUGUGCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT065201.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ||||||||||=|||||||||=|||
targets:724   UUGGCACACCGGACAGUCCGGUGC   747

2.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:743   GGUGCACACCGGACAGUCCGGUGC   766

2.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *||***||||=|||||||||||||
targets:818   GUGCACCACCGGACAGUCCGAUGC   841

2.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *||***||||=|||||||||||||
targets:818   GUGCACCACCGGACAGUCCGAUGC   841

2.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:284   GGUGCACACCGGACAGUCCGGUGC   307

2.5 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
HI410005.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *||||=||||||||||||||=|||
targets:5   GUGGCGCACCAGACAGUCCGGUGC   28

2.5 Sequence 8130 from Patent EP2074227 NA coding protein psRNATarget
JB170466.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *||||=||||||||||||||=|||
targets:5   GUGGCGCACCAGACAGUCCGGUGC   28

2.5 Sequence 8130 from Patent EP2559767 NA coding protein psRNATarget
LQ242135.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *||||=||||||||||||||=|||
targets:5   GUGGCGCACCAGACAGUCCGGUGC   28

2.5 Sequence 8130 from Patent EP2985353 NA coding protein psRNATarget
EZ106959.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *|||||||||=|||||||||=|||
targets:96   GUGGCACACCGGACAGUCCGGUGC   119

2.5 TSA: Zea mays contig42617, mRNA sequence NA coding protein psRNATarget
BT083610.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *|||||||||=|||||||||=|||
targets:799   GUGGCACACCGGACAGUCCGGUGC   822

2.5 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *||||=||||||||||||||=|||
targets:485   GUGGCGCACCAGACAGUCCGGUGC   508

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
EU940845.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *|||||||||=|||||||||=|||
targets:1381   GUGGCACACCGGACAGUCCGGUGC   1404

2.5 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
EU940845.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:1400   GGUGCACACCGGACAGUCCGGUGC   1423

2.5 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
EZ057358.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  *|||||||||||||*|||||||||
targets:218   CUGGCACACCAGACUGUCCGAUGC   241

1.5 TSA: Zea mays contig58480, mRNA sequence NA coding protein psRNATarget
BT068112.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:471   GGUGCACACCGGACAGUCCGGUGC   494

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:600   GGUGCACACCGGACAGUCCGGUGC   623

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:600   GGUGCACACCGGACAGUCCGGUGC   623

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:840   GGUGCACACCGGACAGUCCGGUGC   863

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:840   GGUGCACACCGGACAGUCCGGUGC   863

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:448   GGUGCACACCGGACAGUCCGGUGC   471

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:448   GGUGCACACCGGACAGUCCGGUGC   471

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
EU940831.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:296   GGUGCACACCGGACAGUCCGGUGC   319

2.5 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|||||||=|||||||||=|||
targets:4495   GGUGCACACCGGACAGUCCGGUGC   4518

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
EZ101438.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  |***|=||||||||||||||=|||
targets:38   UGCACGCACCAGACAGUCCGGUGC   61

2.5 TSA: Zea mays contig37094, mRNA sequence NA coding protein psRNATarget
JB169812.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|=|||||=|||||||||=|||
targets:31   GGUGUACACCGGACAGUCCGGUGC   54

2.5 Sequence 7476 from Patent EP2559767 NA coding protein psRNATarget
LQ241481.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|=|||||=|||||||||=|||
targets:31   GGUGUACACCGGACAGUCCGGUGC   54

2.5 Sequence 7476 from Patent EP2985353 NA coding protein psRNATarget
HI409351.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ***|=|||||=|||||||||=|||
targets:31   GGUGUACACCGGACAGUCCGGUGC   54

2.5 Sequence 7476 from Patent EP2074227 NA coding protein psRNATarget
BT016820.1
ncRNA:24   AACCGUGUGGUCUGUCAGGCUACG   1
  ****||||||||||*|||||||||
targets:30   CCCACACACCAGACUGUCCGAUGC   53

1.5 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
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