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BaseInfo

ncRNA ID	novel_zma_miR4955
Species	Zea mays
Class	miRNA
Genome position	Chr3:188405112-188405250 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AAUCUGAUGGCAUACUAGGAAUUU - 24
Stem-loop(if miRNA)	--     CU         UG  AAA                       A  CCCA     -CA    CAC   AUUCU  GUAUGCCAU  GA   UAUACUCGUUCCUUGUGUGCCAC GG    CAUGU   UACA   A   |||||  |||||||||  ||   ||||||||||||||||||||||| ||    |||||   ||||   UAAGG  CAUACGGUA  CU   AUAUGAGUAAGGAACACACGGUG CU    GUAUA   AUGU   A UU     AU         GU  AAA                       A  CACC     UCC    AAA
Stem-loop sequence	AUUCUCUGUAUGCCAUUGGAAAAUAUACUCGUUCCUUGUGUGCCACAGGCCCACAUGUCAUACACACAAAAAUGUACCUAUAUGCCACUCAGUGGCACACAAGGAAUGAGUAUAAAAUCUGAUGGCAUACUAGGAAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU956996.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=||||||||||||||| targets:1536   AAAUUCCUGGUAUGCCAUCAGAUU   1559 Target Full Sequence	1.0	Zea mays clone 1579828 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036355.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=||||||||||||||| targets:925   AAAUUCCUGGUAUGCCAUCAGAUU   948 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108G21 mRNA, complete cds	NA	coding protein	psRNATarget
EU953983.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=||||||||||||||| targets:916   AAAUUCCUGGUAUGCCAUCAGAUU   939 Target Full Sequence	1.0	Zea mays clone 1450906 indole-3-glycerol phosphate lyase mRNA, complete cds	NA	coding protein	psRNATarget
EU942982.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=||||||||||||||| targets:6   AAAUUCCUGGUAUGCCAUCAGAUU   29 Target Full Sequence	1.0	Zea mays clone 1548806 mRNA sequence	NA	coding protein	psRNATarget
EZ069616.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=||||||||||||||| targets:226   AAAUUCCUGGUAUGCCAUCAGAUU   249 Target Full Sequence	1.0	TSA: Zea mays contig05252, mRNA sequence	NA	coding protein	psRNATarget
EZ080420.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=||||||||||||||| targets:32   AAAUUCCUGGUAUGCCAUCAGAUU   55 Target Full Sequence	1.0	TSA: Zea mays contig16059, mRNA sequence	NA	coding protein	psRNATarget
EU949300.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=|||||*||||||||| targets:94   AAAUUCCUGGUAUGGCAUCAGAUU   117 Target Full Sequence	2.5	Zea mays clone 400899 mRNA sequence	NA	coding protein	psRNATarget
EU967272.1	ncRNA:24   UUUAAGGAUCAUACGGUAGUCUAA   1   ||||||||=|||||||||||*||| targets:511   AAAUUCCUGGUAUGCCAUCAAAUU   534 Target Full Sequence	2.5	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget