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BaseInfo

ncRNA ID novel_zma_miR4953
Species Zea mays
Class miRNA
Genome position Chr3:214386943-214387123 [-]
Reference genome RefGen_v4
Source SRR2287163
Length 21
Mature sequence(if miRNA) 161 - UUGGAUUGAGGGGGAUUGGAG - 181
Stem-loop(if miRNA) -U            ---GAUU          -   U                     CA               --------   C      C  CC
  UGGAUUGAGGGG       GGAGGGGAUU AAG GCAUGUUUGGUGUGGCGCCUA  CCGCCACACCGCGCC        UAA CCGCGG GG  A
  ||||||||||||       |||||||||| ||| |||||||||||||||||||||  |||||||||||||||        ||| |||||| ||
  ACUUAACUCCCC       CCUUCUCUAA UUC CGUACAAACCACACCGUGGAU  GGCGGUGUGGUGCGG        GUU GGCGUC CC  A
GC            AAGUUAU          A   -                     UC               UGUGAAAA   C      -  UA
Stem-loop sequence UUGGAUUGAGGGGGAUUGGAGGGGAUUAAGUGCAUGUUUGGUGUGGCGCCUACACCGCCACACCGCGCCUAACCCGCGGCGGCCAAAUCCCUGCGGCUUGAAAAGUGUGGCGUGGUGUGGCGGCUUAGGUGCCACACCAAACAUGCCUUAAAUCUCUUCCUAUUGAACCCCUCAAUUCACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552749.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  ||||||||||||||||||||*
targets:3277   CUCCAAUCCCCCUCAAUCCAC   3297

1.0 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  ||||||||||||||||||||*
targets:1598   CUCCAAUCCCCCUCAAUCCAC   1618

1.0 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  ||||||||||||||||||||*
targets:1598   CUCCAAUCCCCCUCAAUCCAC   1618

1.0 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
BT061531.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  ||=|||||||||||||||||*
targets:847   CUUCAAUCCCCCUCAAUCCAU   867

2.0 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
XM_008661613.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  ||||||||||=|||||||||*
targets:3045   CUCCAAUCCCUCUCAAUCCAC   3065

2.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661611.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  ||||||||||=|||||||||*
targets:3050   CUCCAAUCCCUCUCAAUCCAC   3070

2.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  |||||||||||||||||||**
targets:3925   CUCCAAUCCCCCUCAAUCCCU   3945

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
EZ083462.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  =||||||||||||||||||**
targets:37   UUCCAAUCCCCCUCAAUCCCU   57

2.5 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
LQ238019.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:80   AUCCAAUCCCACUCAAUCCAC   100

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
JB166350.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:80   AUCCAAUCCCACUCAAUCCAC   100

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
HI405889.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:80   AUCCAAUCCCACUCAAUCCAC   100

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:81   AUCCAAUCCCACUCAAUCCAC   101

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:81   AUCCAAUCCCACUCAAUCCAC   101

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:81   AUCCAAUCCCACUCAAUCCAC   101

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
LQ237971.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:90   AUCCAAUCCCACUCAAUCCAC   110

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:90   AUCCAAUCCCACUCAAUCCAC   110

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:90   AUCCAAUCCCACUCAAUCCAC   110

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
JB163466.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAU   119

2.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
LQ235220.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
HI403090.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
LQ235135.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAU   119

2.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403005.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAU   119

2.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
HI403094.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235224.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163551.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:99   AUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
EZ064016.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:121   AUCCAAUCCCACUCAAUCCAC   141

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
EU951448.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:746   AUCCAAUCCCACUCAAUCCAC   766

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:875   AUCCAAUCCCACUCAAUCCAC   895

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:177   AUCCAAUCCCACUCAAUCCAC   197

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1129   AUCCAAUCCCGCUCAAUCCAC   1149

2.5 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1129   AUCCAAUCCCGCUCAAUCCAC   1149

2.5 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:529   AUCCAAUCCCACUCAAUCCAC   549

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1467   AUCCAAUCCCACUCAAUCCAU   1487

2.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1467   AUCCAAUCCCACUCAAUCCAU   1487

2.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
BT088232.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1531   AUCCAAUCCCACUCAAUCCAC   1551

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1531   AUCCAAUCCCACUCAAUCCAC   1551

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
XM_008645912.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1620   AUCCAAUCCCGCUCAAUCCAC   1640

2.5 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001154031.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1816   AUCCAAUCCCACUCAAUCCAC   1836

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1816   AUCCAAUCCCACUCAAUCCAC   1836

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
XM_020553538.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1887   AUCCAAUCCCGCUCAAUCCAC   1907

2.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1953   AUCCAAUCCCGCUCAAUCCAC   1973

2.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664276.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:2048   AUCCAAUCCCGCUCAAUCCAC   2068

2.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:2030   AUCCAAUCCCGCUCAAUCCAC   2050

2.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664275.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:2141   AUCCAAUCCCGCUCAAUCCAC   2161

2.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:2212   AUCCAAUCCCACUCAAUCCAC   2232

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:2501   AUCCAAUCCCACUCAAUCCAC   2521

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:2801   AUCCAAUCCCGCUCAAUCCAC   2821

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1959   AUCCAAUCCCACUCAAUCCAC   1979

2.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1959   AUCCAAUCCCACUCAAUCCAC   1979

2.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:2905   AUCCAAUCCCGCUCAAUCCAC   2925

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1082   AUCCAAUCCCACUCAAUCCAC   1102

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1200   AUCCAAUCCCACUCAAUCCAC   1220

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1200   AUCCAAUCCCACUCAAUCCAC   1220

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:1230   AUCCAAUCCCACUCAAUCCAC   1250

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:5805   AUCCAAUCCCACUCAAUCCAC   5825

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_020539703.1
ncRNA:21   GAGGUUAGGGGGAGUUAGGUU   1
  *|||||||||*|||||||||*
targets:61   AUCCAAUCCCGCUCAAUCCAC   81

2.5 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
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