Search result

BaseInfo

ncRNA ID	osa-miRf10092-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CAUGGUACCUUCUCAAGGAC - NA
Stem-loop(if miRNA)	U              AG                  -AAAAUUUAG      A     C     AUA    C  UUUAUGGUUCUUGA  AGGUACCAUGAGGUACCG          UGUAAA UUUGG ACCUC   GUAU U  ||||||||||||||  ||||||||||||||||||          |||||| ||||| |||||   ||||  AAAUGCCAGGAACU  UCCAUGGUACUCCAUGGU          ACAUUU AAAUC UGGAG   CAUG A A              CU                  GAAAAACAUA      -     A     AAC    G
Stem-loop sequence	UUUUAUGGUUCUUGAAGAGGUACCAUGAGGUACCGAAAAUUUAGUGUAAAAUUUGGCACCUCAUAGUAUCUAGGUACCAAGAGGUACUAAAUUUACAAUACAAAAAGUGGUACCUCAUGGUACCUUCUCAAGGACCGUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779910.1	ncRNA:20   CAGGAACUCUUCCAUGGUAC   1   |||=|||||||||||=|||| targets:427   GUCUUUGAGAAGGUAUCAUG   446 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA	pEARLI1-like lipid transfer protein 1(LOC9272463)	coding protein	psRNATarget
XM_015757723.1	ncRNA:20   CAGGAACUCUUCCAUGGUAC   1   |||=|||||=|||||||||| targets:436   GUCUUUGAGGAGGUACCAUG   455 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
AK288182.1	ncRNA:20   CAGGAACUCUUCCAUGGUAC   1   |||||||||=|||||||||* targets:1301   GUCCUUGAGGAGGUACCAUA   1320 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget
AK072846.1	ncRNA:20   CAGGAACUCUUCCAUGGUAC   1   ||||||*||=|||||||||| targets:1698   GUCCUUAAGGAGGUACCAUG   1717 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:20   CAGGAACUCUUCCAUGGUAC   1   ||||||*||=|||||||||| targets:2079   GUCCUUAAGGAGGUACCAUG   2098 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:20   CAGGAACUCUUCCAUGGUAC   1   ||||||*||=|||||||||| targets:2123   GUCCUUAAGGAGGUACCAUG   2142 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
AK107764.1	ncRNA:20   CAGGAACUCUUCCAUGGUAC   1   ||||||*|||||*||||||| targets:683   GUCCUUAAGAAGAUACCAUG   702 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-133-A12, full insert sequence	NA	coding protein	psRNATarget