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BaseInfo

ncRNA ID novel_zma_miR4948
Species Zea mays
Class miRNA
Genome position Chr2:148581804-148581890 [+]
Reference genome RefGen_v4
Source SRR2287163;SRR2287164;SRR2287165
Length 24
Mature sequence(if miRNA) 1 - GACGGAGUGCAGGUAUAGGGAGGU - 24
Stem-loop(if miRNA) --   -G      A          GG      --G  UG    GUC
  GAC  GAGUGC GGUAUAGGGA  UCCUCG   GG  GACU   U
  |||  |||||| ||||||||||  ||||||   ||  ||||
  CUG  CUUACG CUAUAUCCUU  GGGAGC   CU  UUGA   G
GA   GG      -          -A      AGG  UU    AAU
Stem-loop sequence GACGGAGUGCAGGUAUAGGGAGGUCCUCGGGGUGGACUGUCUGUAAAGUUUUUCGGACGAGGGAUUCCUAUAUCGCAUUCGGGUCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001175223.1
ncRNA:24   UGGAGGGAUAUGGACGUGAGGCAG   1
  |||*=|||**||||||||||||||
targets:323   ACCAUCCUCCACCUGCACUCCGUC   346

2.0 Zea mays putative MYB DNA-binding domain superfamily protein (MYB164), mRNA NA coding protein psRNATarget
BT064525.1
ncRNA:24   UGGAGGGAUAUGGACGUGAGGCAG   1
  |||*=|||**||||||||||||||
targets:323   ACCAUCCUCCACCUGCACUCCGUC   346

2.0 Zea mays full-length cDNA clone ZM_BFc0177P23 mRNA, complete cds NA coding protein psRNATarget