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BaseInfo

ncRNA ID	novel_zma_miR4942
Species	Zea mays
Class	miRNA
Genome position	Chr2:53790693-53790807 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	21
Mature sequence(if miRNA)	1 - UUGGAAUAAAUUGGAGGGACU - 21
Stem-loop(if miRNA)	--        U         C       UA       CA            AAUAAC   UCCCUCCA UUUAUUCCA UUUAGUC  UAAAUUG  AAAUAUGGAAAC      U   |||||||| ||||||||| |||||||  |||||||  ||||||||||||      C   AGGGAGGU AAAUAAGGU AAAUCAG  AUUUAAC  UUUAUAUCUUUG      U UC        U         U       UG       AG            AUUUUA
Stem-loop sequence	UCCCUCCAUUUUAUUCCACUUUAGUCUAUAAAUUGCAAAAUAUGGAAACAAUAACUCUAUUUUAGUUUCUAUAUUUGACAAUUUAGUGACUAAAUUGGAAUAAAUUGGAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552869.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||||||||||||* targets:1659   AGUCCCUCCAAUUUAUUCCAC   1679 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||||||||||||* targets:20   AGUCCCUCCAAUUUAUUCCAC   40 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||||||||||||* targets:143   AGUCCCUCCAAUUUAUUCCAU   163 Target Full Sequence	1.0	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:2989   AGUCCCUCCAUUUUAUUCCAC   3009 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:2600   AGUCCCUCCAUUUUAUUCCAC   2620 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:482   AGUCCCUCCAUUUUAUUCCAC   502 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:294   AGUCCCUCCAUUUUAUUCCAU   314 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:169   AGUCCCUCCAUUUUAUUCCAU   189 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:169   AGUCCCUCCAUUUUAUUCCAU   189 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:169   AGUCCCUCCAUUUUAUUCCAU   189 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:78   AGUCCCUCCAUUUUAUUCCAU   98 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:78   AGUCCCUCCAUUUUAUUCCAU   98 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   ||||||||||*|||||||||* targets:78   AGUCCCUCCAUUUUAUUCCAU   98 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB167254.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   |*|||||||*||||||||||* targets:9   AAUCCCUCCCAUUUAUUCCAC   29 Target Full Sequence	2.5	Sequence 4918 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238923.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   |*|||||||*||||||||||* targets:9   AAUCCCUCCCAUUUAUUCCAC   29 Target Full Sequence	2.5	Sequence 4918 from Patent EP2985353	NA	coding protein	psRNATarget
HI406793.1	ncRNA:21   UCAGGGAGGUUAAAUAAGGUU   1   |*|||||||*||||||||||* targets:9   AAUCCCUCCCAUUUAUUCCAC   29 Target Full Sequence	2.5	Sequence 4918 from Patent EP2074227	NA	coding protein	psRNATarget