Search result

BaseInfo

ncRNA ID	novel_zma_miR4909
Species	Zea mays
Class	miRNA
Genome position	Chr1:189809427-189809546 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AAUGGUAUAAAAUAGAGGGACUAA - 24
Stem-loop(if miRNA)	--      A  A       U          U                                AGUCCC UC AUUUUAU CUAUUUUAGU CCUAAAUUACUAAAUAUGGAAACUAAAAUA   |||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||G   UCAGGG AG UAAAAUA GGUAAAAUCA GGAUUUAAUGGUUUAUAUCUUUGAUUUUGA AA      -  A       U          U
Stem-loop sequence	AGUCCCAUCAAUUUUAUUCUAUUUUAGUUCCUAAAUUACUAAAUAUGGAAACUAAAAUAGAGUUUUAGUUUCUAUAUUUGGUAAUUUAGGUACUAAAAUGGUAUAAAAUAGAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget