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BaseInfo

ncRNA ID novel_zma_miR4905
Species Zea mays
Class miRNA
Genome position Chr4:237827484-237827579 [-]
Reference genome RefGen_v4
Source SRR1618882
Length 21
Mature sequence(if miRNA) 1 - AAGUGUGGCAAGUUAGACAGC - 21
Stem-loop(if miRNA) ---GG      A          -------------              CG   G
     CUAACU UGUCACACUU             UGCCUAAGGUUAGU  UUC A
     |||||| ||||||||||             ||||||||||||||  ||| A
     GAUUGA ACGGUGUGAA             ACGGAUUCCAAUCA  GAG U
CGACA      -          AUGGAUUGAAAAC              AG   U
Stem-loop sequence GGCUAACUAUGUCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAGGAACUAACCUUAGGCACAAAAGUUAGGUAAAGUGUGGCAAGUUAGACAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ057573.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |||||||||=|||||||||||
targets:249   GCUGUCUAAUUUGCCACACUU   269

1.5 TSA: Zea mays contig58695, mRNA sequence NA coding protein psRNATarget
HI403392.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*||||||||||||||||
targets:17   GCUGCCUAACUUGCCACACUU   37

1.0 Sequence 1517 from Patent EP2074227 NA coding protein psRNATarget
JB163853.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*||||||||||||||||
targets:17   GCUGCCUAACUUGCCACACUU   37

1.0 Sequence 1517 from Patent EP2559767 NA coding protein psRNATarget
LQ235522.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*||||||||||||||||
targets:17   GCUGCCUAACUUGCCACACUU   37

1.0 Sequence 1517 from Patent EP2985353 NA coding protein psRNATarget
BT083952.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*|||||||||||||||||||
targets:1482   GGUGUCUAACUUGCCACACUU   1502

0.0 Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds NA coding protein psRNATarget
XM_008660020.2
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*|||||||||||||||||||
targets:3006   GAUGUCUAACUUGCCACACUU   3026

0.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*|||||||||||||||||||
targets:3134   GAUGUCUAACUUGCCACACUU   3154

0.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*|||||||||||||||||||
targets:3141   GAUGUCUAACUUGCCACACUU   3161

0.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
JB163747.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*||||||||=|||||||
targets:17   GCUGCCUAACUUGUCACACUU   37

2.5 Sequence 1411 from Patent EP2559767 NA coding protein psRNATarget
LQ235416.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*||||||||=|||||||
targets:17   GCUGCCUAACUUGUCACACUU   37

2.5 Sequence 1411 from Patent EP2985353 NA coding protein psRNATarget
HI403286.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*||||||||=|||||||
targets:17   GCUGCCUAACUUGUCACACUU   37

2.5 Sequence 1411 from Patent EP2074227 NA coding protein psRNATarget
JB163753.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*=|||||||||||||||
targets:17   GCUGCUUAACUUGCCACACUU   37

2.0 Sequence 1417 from Patent EP2559767 NA coding protein psRNATarget
LQ235422.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*=|||||||||||||||
targets:17   GCUGCUUAACUUGCCACACUU   37

2.0 Sequence 1417 from Patent EP2985353 NA coding protein psRNATarget
HI403292.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  ||||*=|||||||||||||||
targets:17   GCUGCUUAACUUGCCACACUU   37

2.0 Sequence 1417 from Patent EP2074227 NA coding protein psRNATarget
EU968686.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  *|||*||||||||||||||||
targets:621   ACUGCCUAACUUGCCACACUU   641

1.0 Zea mays clone 323451 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT065161.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  *|||*||||||||||||||||
targets:604   ACUGCCUAACUUGCCACACUU   624

1.0 Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds NA coding protein psRNATarget
XM_020550436.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  *|||*||||||||||||||||
targets:639   ACUGCCUAACUUGCCACACUU   659

1.0 PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA NA coding protein psRNATarget
XM_020540795.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  *|||*|||||||||||||=||
targets:691   CCUGCCUAACUUGCCACAUUU   711

2.5 PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA NA coding protein psRNATarget
BT033837.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*||*||||||||||||||||
targets:929   GAUGCCUAACUUGCCACACUU   949

1.0 Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds NA coding protein psRNATarget
NM_001137099.2
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*||*||||||||||||||||
targets:1417   GAUGCCUAACUUGCCACACUU   1437

1.0 Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA NA coding protein psRNATarget
AY109437.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*||*||||||||||||||||
targets:1427   GAUGCCUAACUUGCCACACUU   1447

1.0 Zea mays CL903_-1 mRNA sequence NA coding protein psRNATarget
XM_008660313.2
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*||*||||||||||||||||
targets:708   GAUGGCUAACUUGCCACACUU   728

1.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660311.2
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*||*||||||||||||||||
targets:708   GAUGGCUAACUUGCCACACUU   728

1.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660309.2
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*||*||||||||||||||||
targets:708   GAUGGCUAACUUGCCACACUU   728

1.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670840.2
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  |*||*||||||||||||||||
targets:2673   GAUGGCUAACUUGCCACACUU   2693

1.0 PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA NA coding protein psRNATarget
BT018862.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  **||*||||||||||||||||
targets:1047   AGUGCCUAACUUGCCACACUU   1067

1.0 Zea mays clone EL01N0559E06.d mRNA sequence NA coding protein psRNATarget
EZ066409.1
ncRNA:21   CGACAGAUUGAACGGUGUGAA   1
  *|||*||||*|||||||||||
targets:5   CCUGCCUAAGUUGCCACACUU   25

2.5 TSA: Zea mays contig02043, mRNA sequence NA coding protein psRNATarget
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