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BaseInfo

ncRNA ID	novel_zma_miR4901
Species	Zea mays
Class	miRNA
Genome position	Chr10:105177202-105177335 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	23
Mature sequence(if miRNA)	112 - AGGGCUGAUUUGGUGAUCGGAGA - 134
Stem-loop(if miRNA)	--                    A                                     U     A   AGGGCUGAUUUGGUGAUCGG GAUCCCGAGGGGAUCCAUGGGGGAGAAAUCCCCUUGC AUUCA A   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||   UCCCGACUAAACUACUAGCC CUAGGGCUCCCCUAGGUACCCCCUCUUUAGGGGAGCG UAAGU A AG                    C                                     U     U
Stem-loop sequence	AGGGCUGAUUUGGUGAUCGGAGAUCCCGAGGGGAUCCAUGGGGGAGAAAUCCCCUUGCUAUUCAAAAUUGAAUUGCGAGGGGAUUUCUCCCCCAUGGAUCCCCUCGGGAUCCCCGAUCAUCAAAUCAGCCCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018533.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||||=|||||=|||||||||||| targets:1919   UCUCUGAUCAUCAAAUCAGCCCU   1941 Target Full Sequence	2.5	Zea mays clone EL01N0434E06.d mRNA sequence	NA	coding protein	psRNATarget
EU974244.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=|||||||||||||||| targets:491   UCACCGGUCACCAAAUCAGCCCU   513 Target Full Sequence	1.0	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=|||||||||||||||| targets:71   UCCCCGGUCACCAAAUCAGCCCU   93 Target Full Sequence	1.0	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403445.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|=|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|=|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
JB163906.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|=|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
HI403301.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|=|||||||||||||||| targets:97   UCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
JB163762.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|=|||||||||||||||| targets:97   UCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|=|||||||||||||||| targets:97   UCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=||||||||||||=||| targets:160   UCCCCGGUCACCAAAUCAGUCCU   182 Target Full Sequence	2.5	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
BT087480.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=||||||||||||=||| targets:867   UCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=||||||||||||=||| targets:867   UCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
EU967725.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=|||||||||||||=|| targets:1133   UCCCCGGUCACCAAAUCAGCUCU   1155 Target Full Sequence	2.5	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
BT037942.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=|||||||||=|||||| targets:54   UCCCCGGUCACCAAAUUAGCCCU   76 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0203O02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143476.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=|||||||||=|||||| targets:54   UCCCCGGUCACCAAAUUAGCCCU   76 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100217107), mRNA	NA	coding protein	psRNATarget
BT084817.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=|||||||||=|||||| targets:148   UCCCCGGUCACCAAAUUAGCCCU   170 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186I10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675221.2	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|=|||||||||||||||* targets:181   UCCCUGGUCACCAAAUCAGCCCG   203 Target Full Sequence	3.0	PREDICTED: Zea mays gibberellin responsive 1 (gar1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB170445.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|||||||||||||||*|| targets:114   UCCCUGAUCACCAAAUCAGCACU   136 Target Full Sequence	2.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|||||||||||||||*|| targets:114   UCCCUGAUCACCAAAUCAGCACU   136 Target Full Sequence	2.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
HI409984.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=|||||||||||||||*|| targets:114   UCCCUGAUCACCAAAUCAGCACU   136 Target Full Sequence	2.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
BT041878.2	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=||||||||*||||||| targets:318   UCCCCGGUCACCAAACCAGCCCU   340 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148227.2	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=||||||||*||||||| targets:318   UCCCCGGUCACCAAACCAGCCCU   340 Target Full Sequence	2.5	Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA	NA	coding protein	psRNATarget
BT087775.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|||=||||||||*||||||| targets:325   UCCCCGGUCACCAAACCAGCCCU   347 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538171.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=||||||||||||||*||| targets:2   UCCCUGAUCACCAAAUCAGACCU   24 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   ||*|=*||||||||||||||||* targets:153   UCCCUAAUCACCAAAUCAGCCCG   175 Target Full Sequence	3.0	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EU943476.1	ncRNA:23   AGAGGCUAGUGGUUUAGUCGGGA   1   |||=*||**|||||||||||||| targets:991   UCUUGGAAAACCAAAUCAGCCCU   1013 Target Full Sequence	3.0	Zea mays clone 1625592 mRNA sequence	NA	coding protein	psRNATarget