Search result

BaseInfo

ncRNA ID	novel_zma_miR4899
Species	Zea mays
Class	miRNA
Genome position	Chr4:245049423-245049499 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR5099742;SRR5100248;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUUUGGCAAUUUUAGAACUAAAAU - 24
Stem-loop(if miRNA)	--      GUAU                             UUUAGU    AAAUUGCUAAAUAUAGAAACUAAAAUA   ||||||    ||||||||||||||||||||||||||A   AAAUCA    UUUAACGGUUUAUAUCUUUGAUUUUGA UA      AGAU
Stem-loop sequence	UUUAGUGUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGGCAAUUUUAGAACUAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052166.1	ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1   |||||||||=||||||||=||||| targets:798   AUUUUAGUUUUAAAAUUGUCAAAU   821 Target Full Sequence	2.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
EU956677.1	ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1   ||||||||||*||||||||||||| targets:2058   AUUUUAGUUCCAAAAUUGCCAAAU   2081 Target Full Sequence	1.0	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1   ||||||||||*||||||||=|||| targets:1018   AUUUUAGUUCCAAAAUUGCUAAAU   1041 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1   ||||||||||*||||||*|||||| targets:861   AUUUUAGUUCCAAAAUUUCCAAAU   884 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1   ||||||||||*||||||*|||||| targets:861   AUUUUAGUUCCAAAAUUUCCAAAU   884 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1   ||||||||||*||||||*|||||| targets:90   AUUUUAGUUCCAAAAUUACCAAAU   113 Target Full Sequence	2.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget