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BaseInfo

ncRNA ID	novel_zma_miR4894
Species	Zea mays
Class	miRNA
Genome position	Chr3:234957646-234957703 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR4237222;SRR4237224;SRR4237225;SRR5100248;SRR5100255;SRR2089707
Length	24
Mature sequence(if miRNA)	35 - GGACCGUCCGGCUGUCAGGCAGGG - 58
Stem-loop(if miRNA)	--    ---   C  G     C     -   C   CUGC   GCA GC CGGAC GUCCG GCC U   ||||   ||| || ||||| ||||| |||   GACG   UGU CG GCCUG CAGGC CGG A GG    GAC   -  -     C     G   G
Stem-loop sequence	CUGCGCACGCGCGGACCGUCCGGCCCUAGGGCGCGGACCGUCCGGCUGUCAGGCAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968855.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   |||||||||||=|||||||||||| targets:759   CCCUGCCUGACGGCCGGACGGUCC   782 Target Full Sequence	1.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =||||||||||=|||||||||||| targets:62   UCCUGCCUGACGGCCGGACGGUCC   85 Target Full Sequence	1.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
EU970066.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   |=|||||||||=|||||||||||| targets:966   CUCUGCCUGACGGCCGGACGGUCC   989 Target Full Sequence	1.5	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
XM_020547963.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =||||||||||=|||||||||||| targets:1115   UCCUGCCUGACGGCCGGACGGUCC   1138 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =||||||||||=|||||||||||| targets:1408   UCCUGCCUGACGGCCGGACGGUCC   1431 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
NM_001196134.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =||||||||||=|||||||||||| targets:1540   UCCUGCCUGACGGCCGGACGGUCC   1563 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100501411), mRNA	NA	coding protein	psRNATarget
BT085255.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =||||||||||=|||||||||||| targets:1540   UCCUGCCUGACGGCCGGACGGUCC   1563 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =||||||||||=|||||||||||| targets:1490   UCCUGCCUGACGGCCGGACGGUCC   1513 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =|||*||||||=|||||||||||| targets:1719   UCCUACCUGACGGCCGGACGGUCC   1742 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   GGGACGGACUGUCGGCCUGCCAGG   1   =|||*||||||=|||||||||||| targets:1719   UCCUACCUGACGGCCGGACGGUCC   1742 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget