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BaseInfo

ncRNA ID	novel_zma_miR4893
Species	Zea mays
Class	miRNA
Genome position	Chr9:9654340-9654432 [+]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	70 - GAUUUGGUGACAAGGGGAUCUCGG - 93
Stem-loop(if miRNA)	-- U       -G                 --  -------    UCAAAA   G GAUCCCU  GUCACCAAAUCAACCCU  CA       GCGU      C   | |||||||  |||||||||||||||||  ||       ||||      C   C CUAGGGG  CAGUGGUUUAGUUGGGA  GU       CGCA      C GG U       AA                 CU  CAAUAAA    CUACAA
Stem-loop sequence	GUGAUCCCUGGUCACCAAAUCAACCCUCAGCGUUCAAAACCCAACAUCACGCAAAUAACUGUCAGGGUUGAUUUGGUGACAAGGGGAUCUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241793.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	0.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	0.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	0.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:846   CCGGGAUCCCCUUGUCACCAAAUC   869 Target Full Sequence	0.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:885   CCGGGAUCCCCUUGUCACCAAAUC   908 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:890   CCGGGAUCCCCUUGUCACCAAAUC   913 Target Full Sequence	0.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:890   CCGGGAUCCCCUUGUCACCAAAUC   913 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||=|||||||||||||||||||| targets:1495   CCGGGAUCCCCUUGUCACCAAAUC   1518 Target Full Sequence	0.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   =||=|||||||||||||||||||| targets:102   UCGGGAUCCCCUUGUCACCAAAUC   125 Target Full Sequence	0.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   *||=|||||||||||||||||||| targets:110   ACGGGAUCCCCUUGUCACCAAAUC   133 Target Full Sequence	0.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*|||||||||||||||||||| targets:296   CCGUGAUCCCCUUGUCACCAAAUC   319 Target Full Sequence	0.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*||||||||||||=||||||| targets:1823   CCGUGAUCCCCUUGUCGCCAAAUC   1846 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*|||||||||||||||||||* targets:399   CCGUGAUCCCCUUGUCACCAAAUG   422 Target Full Sequence	1.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
EZ082583.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |=|*|||||=|||||||=|||||| targets:14   CUGUGAUCCUCUUGUCAUCAAAUC   37 Target Full Sequence	2.5	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*|||||*|||||||||||||| targets:156   CCGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*|||||*|||||||||||||| targets:156   CCGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*|||||*|||||||||||||| targets:156   CCGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
LQ235557.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*||*|=||||||||||||||= targets:56   CCGUGACCUCCUUGUCACCAAAUU   79 Target Full Sequence	3.0	Sequence 1552 from Patent EP2985353	NA	coding protein	psRNATarget
HI403427.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*||*|=||||||||||||||= targets:56   CCGUGACCUCCUUGUCACCAAAUU   79 Target Full Sequence	3.0	Sequence 1552 from Patent EP2074227	NA	coding protein	psRNATarget
HI403300.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*||*|=||||||||||||||= targets:56   CCGUGACCUCCUUGUCACCAAAUU   79 Target Full Sequence	3.0	Sequence 1425 from Patent EP2074227	NA	coding protein	psRNATarget
JB163761.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*||*|=||||||||||||||= targets:56   CCGUGACCUCCUUGUCACCAAAUU   79 Target Full Sequence	3.0	Sequence 1425 from Patent EP2559767	NA	coding protein	psRNATarget
JB163888.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*||*|=||||||||||||||= targets:56   CCGUGACCUCCUUGUCACCAAAUU   79 Target Full Sequence	3.0	Sequence 1552 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235430.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   |||*||*|=||||||||||||||= targets:56   CCGUGACCUCCUUGUCACCAAAUU   79 Target Full Sequence	3.0	Sequence 1425 from Patent EP2985353	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   GGCU-CUAGGGGAACAGUGGUUUAG   1   ==|=-|||||*|||||=|||||||| targets:1591   UUGGUGAUCCACUUGUUACCAAAUC   1615 Target Full Sequence	2.5	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
EU972859.1	ncRNA:24   GGCUCUAGGGGAACAGUGGUUUAG   1   ******||||=||||||||||||| targets:3   AACUCUUCCCUUUGUCACCAAAUC   26 Target Full Sequence	2.0	Zea mays clone 389166 ATP binding protein mRNA, complete cds	NA	coding protein	psRNATarget