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BaseInfo

ncRNA ID novel_zma_miR4889
Species Zea mays
Class miRNA
Genome position Chr9:5081509-5081592 [-]
Reference genome RefGen_v4
Source SRR2287163
Length 24
Mature sequence(if miRNA) 61 - ACCAUAGGGAUUGAGGGAGAUUGG - 84
Stem-loop(if miRNA) --A               GA       AGGGA   GA   GAU
   CCAUAGGGAUUGAGG  GAUUGGA     UUG  GAG   U
   |||||||||||||||  |||||||     |||  |||
   GGUAUCCCUAACUCC  CUAAUUU     GAU  UUC   U
UUA               UC       -AGGG   -G   AAU
Stem-loop sequence ACCAUAGGGAUUGAGGGAGAUUGGAAGGGAUUGGAGAGGAUUUUAACUUGUAGGGGAUUUAAUCCUCCUCAAUCCCUAUGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ083462.1
ncRNA:24   GGUUAGAGGGAGUUAGGGAUACCA   1
  ||||||*|||||||||||||||||
targets:39   CCAAUCCCCCUCAAUCCCUAUGGU   62

1.0 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
XM_020547439.1
ncRNA:24   GGUUAGAGGGAGUUAGGGAUACCA   1
  ||||||*||||||||||||||||*
targets:3927   CCAAUCCCCCUCAAUCCCUAUGGA   3950

2.0 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
HI407338.1
ncRNA:24   GGUUAGAGGGAGUUAGGGAUACCA   1
  ==||||*||||||||||||||||*
targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96

2.0 Sequence 5463 from Patent EP2074227 NA coding protein psRNATarget
JB167799.1
ncRNA:24   GGUUAGAGGGAGUUAGGGAUACCA   1
  ==||||*||||||||||||||||*
targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96

2.0 Sequence 5463 from Patent EP2559767 NA coding protein psRNATarget
LQ239468.1
ncRNA:24   GGUUAGAGGGAGUUAGGGAUACCA   1
  ==||||*||||||||||||||||*
targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96

2.0 Sequence 5463 from Patent EP2985353 NA coding protein psRNATarget
XM_020537815.1
ncRNA:24   GGUUAGAGGGAGUUAGGGAUACCA   1
  ==||||*||||||||||||||||*
targets:2603   UUAAUCCCCCUCAAUCCCUAUGGA   2626

2.0 PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA NA coding protein psRNATarget
XM_008653299.2
ncRNA:24   GGUUAGAGGGAGUUAGGGAUACCA   1
  ===|||*||||||||||||||||*
targets:820   UUGAUCCCCCUCAAUCCCUAUGGA   843

2.0 PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA NA coding protein psRNATarget