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BaseInfo

ncRNA ID novel_zma_miR4880
Species Zea mays
Class miRNA
Genome position Chr8:119335856-119335985 [+]
Reference genome RefGen_v4
Source SRR2287163
Length 24
Mature sequence(if miRNA) 1 - ACAUUAGGGUAGGAUACGAGAUGA - 24
Stem-loop(if miRNA) --   -   G GU          A   -       --  ---      UAUCC   C  UUUUCAUCCC
  ACA UUA G  AGGAUACGAG UGA CCCUGUA  UC   CGGCUG     GUC CG          U
  ||| ||| |  |||||||||| ||| |||||||  ||   ||||||     ||| ||          A
  UGU AGU C  UCCUGUGCUU AUU GGGACGU  AG   GCCGAC     CAG GC          C
UU   C   G --          G   C       CA  ACU      UACUC   A  CACCUGCCGC
Stem-loop sequence ACAUUAGGGUAGGAUACGAGAUGACCCUGUAUCCGGCUGUAUCCGUCCCGUUUUCAUCCCUACCGCCGUCCACCGAGACCUCAUCAGCCGUCAGAACUGCAGGGCUUAGUUCGUGUCCUCGUGACUGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008647099.2
ncRNA:24   AGUAGAGCAUAGGAUGGGAUUACA   1
  |||||*=|||||||||||||||||
targets:1653   UCAUCCUGUAUCCUACCCUAAUGU   1676

2.0 PREDICTED: Zea mays uncharacterized protein (LOC103626711), mRNA NA coding protein psRNATarget
XM_008675942.2
ncRNA:24   AGUAGAGCAUAGGAUGGGAUUACA   1
  ||||*|=|||||||||||||||||
targets:5659   UCAUAUUGUAUCCUACCCUAAUGU   5682

1.0 PREDICTED: Zea mays uncharacterized LOC103650349 (LOC103650349), mRNA NA coding protein psRNATarget