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BaseInfo

ncRNA ID novel_zma_miR4878
Species Zea mays
Class miRNA
Genome position Chr1:177710973-177711035 [+]
Reference genome RefGen_v4
Source SRR2287163;SRR1997865;SRR1997866
Length 24
Mature sequence(if miRNA) 1 - ACACCGGACUGUCCAGUGGUGCAU - 24
Stem-loop(if miRNA) --        --   U  AG         G   
  ACACCGGA  CUG CC  UGGUGCAUC GACA
  ||||||||  ||| ||  ||||||||| |||G
  UGUGGCCU  GAC GG  ACCGCGUGG CUGU
UG        CC   C  --         A   
Stem-loop sequence ACACCGGACUGUCCAGUGGUGCAUCGGACAGUGUCAGGUGCGCCAGGCCAGCCUCCGGUGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409909.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:34   GUGCACCACCGGACAGUCCGGUGU   57

1.0 Sequence 8034 from Patent EP2074227 NA coding protein psRNATarget
LQ242039.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:34   GUGCACCACCGGACAGUCCGGUGU   57

1.0 Sequence 8034 from Patent EP2985353 NA coding protein psRNATarget
JB170370.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:34   GUGCACCACCGGACAGUCCGGUGU   57

1.0 Sequence 8034 from Patent EP2559767 NA coding protein psRNATarget
JB170644.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 8308 from Patent EP2559767 NA coding protein psRNATarget
LQ242313.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 8308 from Patent EP2985353 NA coding protein psRNATarget
HI410183.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 8308 from Patent EP2074227 NA coding protein psRNATarget
HI409038.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 7163 from Patent EP2074227 NA coding protein psRNATarget
JB169499.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 7163 from Patent EP2559767 NA coding protein psRNATarget
LQ241168.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 7163 from Patent EP2985353 NA coding protein psRNATarget
HI408938.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 7063 from Patent EP2074227 NA coding protein psRNATarget
LQ241068.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 7063 from Patent EP2985353 NA coding protein psRNATarget
JB169399.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:32   GUGCACCACCGGACAGUCCGGUGU   55

1.0 Sequence 7063 from Patent EP2559767 NA coding protein psRNATarget
BT066461.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:852   GUGCACCACCGGACAGUCCGGUGU   875

1.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||**||||||||||||*
targets:727   GUGCACCACCAGACAGUCCGGUGA   750

3.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
EU940831.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||||||||||||
targets:535   GUGCACCACCGGACAGUCCGGUGU   558

1.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||*|*|||*|||||||||||||*
targets:180   GUGGAGCACCGGACAGUCCGGUGC   203

3.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
BT086229.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||*|||||*|||||||||||||*
targets:649   GUGAACCACCGGACAGUCCGGUGA   672

2.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
LQ241570.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:32   GUGCACCACCGGACAGUCCGGUGC   55

2.0 Sequence 7565 from Patent EP2985353 NA coding protein psRNATarget
JB169901.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:32   GUGCACCACCGGACAGUCCGGUGC   55

2.0 Sequence 7565 from Patent EP2559767 NA coding protein psRNATarget
HI409440.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:32   GUGCACCACCGGACAGUCCGGUGC   55

2.0 Sequence 7565 from Patent EP2074227 NA coding protein psRNATarget
BT042818.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =|||||||||||||*||||||||*
targets:757   GUGCACCACUGGACUGUCCGGUGC   780

2.5 Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:726   GUGCACCACCGGACAGUCCGGUGC   749

2.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  ||||=||||*|||||||||||||*
targets:1029   AUGCGCCACCGGACAGUCCGGUGC   1052

2.0 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  ||||=||||*|||||||||||||*
targets:1400   AUGCGCCACCGGACAGUCCGGUGC   1423

2.0 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:802   GUGCACCACCGGACAGUCCGGUGC   825

2.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:802   GUGCACCACCGGACAGUCCGGUGC   825

2.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:665   GUGCACCACCGGACAGUCCGGUGC   688

2.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:665   GUGCACCACCGGACAGUCCGGUGC   688

2.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*|||||||||||||*
targets:4713   GUGCACCACCGGACAGUCCGGUGC   4736

2.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
NM_001349964.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =|||=||||*|||||||||||||*
targets:2994   GUGCGCCACCGGACAGUCCGGUGC   3017

2.0 Zea mays uncharacterized LOC100278112 (IDP592), mRNA NA coding protein psRNATarget
EU947420.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||||||||*||||*|||||||||
targets:579   GUGCACCACCGGACUGUCCGGUGU   602

2.5 Zea mays clone 342805 mRNA sequence NA coding protein psRNATarget
XM_008664950.2
ncRNA:24   UA---CGUGGUGACCUGUCAGGCCACA   1
  ||---|||||||*||||||||=|||||
targets:257   AUAGGGCACCACCGGACAGUCUGGUGU   283

2.5 PREDICTED: Zea mays potassium transporter 1-like (HAK19), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008664949.2
ncRNA:24   UA---CGUGGUGACCUGUCAGGCCACA   1
  ||---|||||||*||||||||=|||||
targets:256   AUAGGGCACCACCGGACAGUCUGGUGU   282

2.5 PREDICTED: Zea mays potassium transporter 1-like (HAK19), transcript variant X1, mRNA NA coding protein psRNATarget
BT064593.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||==|||||||||*||||||||*
targets:779   GUGUGCCACUGGACUGUCCGGUGC   802

2.5 Zea mays full-length cDNA clone ZM_BFc0188B15 mRNA, complete cds NA coding protein psRNATarget
BT063396.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||==|||||||||*||||||||*
targets:2738   GUGUGCCACUGGACUGUCCGGUGC   2761

2.5 Zea mays full-length cDNA clone ZM_BFc0059P01 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =|||*=|||*|||||||||||||*
targets:355   GUGCCUCACCGGACAGUCCGGUGC   378

3.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT069074.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =|||*=|||*|||||||||||||*
targets:682   GUGCUUCACCGGACAGUCCGGUGA   705

3.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  *||=*||||*|||||||||||||*
targets:815   UUGUCCCACCGGACAGUCCGGUGC   838

2.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
EU940845.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =|||*=|||*|||||||||||||*
targets:1471   GUGCCUCACCGGACAGUCCGGUGC   1494

3.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
HI409932.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||**||||*|||||||||||||*
targets:31   GUGGCCCACCGGACAGUCCGGUGC   54

2.0 Sequence 8057 from Patent EP2074227 NA coding protein psRNATarget
LQ242062.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||**||||*|||||||||||||*
targets:31   GUGGCCCACCGGACAGUCCGGUGC   54

2.0 Sequence 8057 from Patent EP2985353 NA coding protein psRNATarget
JB170393.1
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  =||**||||*|||||||||||||*
targets:31   GUGGCCCACCGGACAGUCCGGUGC   54

2.0 Sequence 8057 from Patent EP2559767 NA coding protein psRNATarget
XM_008675750.2
ncRNA:24   UACGUGGUGACCUGUCAGGCCACA   1
  *||*==||||*||||||||||||*
targets:1378   UUGGGUCACUAGACAGUCCGGUGC   1401

3.0 PREDICTED: Zea mays uncharacterized LOC103650089 (LOC103650089), mRNA NA coding protein psRNATarget
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