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BaseInfo

ncRNA ID	novel_zma_miR4876
Species	Zea mays
Class	miRNA
Genome position	Chr8:96442895-96443095 [+]
Reference genome	RefGen_v4
Source	SRR2287163
Length	20
Mature sequence(if miRNA)	1 - UGAUAUCAUAUGUAGAAGCU - 20
Stem-loop(if miRNA)	--                A C           U              A    G    G C     A               CC GU     -        C   UGAUAUCAUAUGUAGA G UGUGAUAAAAA UUGAGAAUGUUUUG GAAA UUGU A GCACU UGUGUAGAAACCUAG  G  CUAUA AUGAAAUU U   |||||||||||||||| | ||||||||||| |||||||||||||| |||| |||| | ||||| |||||||||||||||  |  ||||| ||||||||   ACUAUAGUAUACAUCU C ACACUAUUUUU AGCUUUUGUAAAGC CUUU AAUA U UGUGA ACACAUCUUUGGAUU  C  GAUGU UACUUUAG A GU                C A           U              A    G    G U     C               CA AG     G        U
Stem-loop sequence	UGAUAUCAUAUGUAGAAGCUGUGAUAAAAAUUUGAGAAUGUUUUGAGAAAGUUGUGACGCACUAUGUGUAGAAACCUAGCCGGUCUAUAAUGAAAUUCUAUGAUUUCAUGUGUAGGACACUUAGGUUUCUACACACAGUGUUUGAUAAGUUUCACGAAAUGUUUUCGAUUUUUUAUCACAACCUCUACAUAUGAUAUCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235339.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   |||*|||||||||||||||| targets:207   AGCCUCUACAUAUGAUAUCA   226 Target Full Sequence	1.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   |||*|||||||||||||||| targets:207   AGCCUCUACAUAUGAUAUCA   226 Target Full Sequence	1.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   |||*|||||||||||||||| targets:207   AGCCUCUACAUAUGAUAUCA   226 Target Full Sequence	1.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
EZ089840.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   |||*|||||||||||||||| targets:3   AGCCUCUACAUAUGAUAUCA   22 Target Full Sequence	1.0	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
XM_020548700.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   ||*|||||||||||||*||| targets:805   AGAUUCUACAUAUGAUCUCA   824 Target Full Sequence	2.5	PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At1g03510 (LOC103648117), mRNA	NA	coding protein	psRNATarget
NM_001138292.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   ||*|||||||||||||*||| targets:741   AGAUUCUACAUAUGAUCUCA   760 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193133 (LOC100193133), mRNA	NA	coding protein	psRNATarget
EU974570.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   ||*|||||||||||||*||| targets:741   AGAUUCUACAUAUGAUCUCA   760 Target Full Sequence	2.5	Zea mays clone 453195 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035315.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   ||*|||||||||||||*||| targets:725   AGAUUCUACAUAUGAUCUCA   744 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054N22 mRNA, complete cds	NA	coding protein	psRNATarget
BT062003.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   ||*|||||||||||||*||| targets:558   AGAUUCUACAUAUGAUCUCA   577 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0205K09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174500.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   ||*|||||||||||||*||| targets:558   AGAUUCUACAUAUGAUCUCA   577 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381688 (LOC100381688), mRNA	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   ||=**||||||||||||||| targets:4026   AGUCGCUACAUAUGAUAUCA   4045 Target Full Sequence	3.0	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
NM_001147481.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   *|*|||||||||||||||*| targets:583   UGAUUCUACAUAUGAUAUGA   602 Target Full Sequence	2.5	Zea mays 26S protease regulatory subunit 8 homolog B (LOC100273032), mRNA	NA	coding protein	psRNATarget
BT040039.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   *|*|||||||||||||||*| targets:583   UGAUUCUACAUAUGAUAUGA   602 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0060H23 mRNA, complete cds	NA	coding protein	psRNATarget
BT043217.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   *|*|||||||||||||||*| targets:571   UGAUUCUACAUAUGAUAUGA   590 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0121O19 mRNA, complete cds	NA	coding protein	psRNATarget
BT054955.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   *|*|||||||||||||||*| targets:502   UGAUUCUACAUAUGAUAUGA   521 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0107J04 mRNA, complete cds	NA	coding protein	psRNATarget
EU944787.1	ncRNA:20   UCGAAGAUGUAUACUAUAGU   1   *|*|||||||||||||||*| targets:643   UGAUUCUACAUAUGAUAUGA   662 Target Full Sequence	2.5	Zea mays clone 230239 mRNA sequence	NA	coding protein	psRNATarget