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BaseInfo

ncRNA ID	novel_zma_miR4875
Species	Zea mays
Class	miRNA
Genome position	Chr8:94280885-94281059 [+]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	152 - AUCAGAUGGUUUACUUGCACGCUU - 175
Stem-loop(if miRNA)	--         C                                       C  AUUUAAUACUUAAACCCUU   CCACUGGCUCAAUAAUCUUUA   GCGUGCAAG AAACCAUCUGAUCCGUUAGAUCGUGAUCCAACCGUAGGU AC                   CCA                     U   ||||||||| ||||||||||||||||||||||||||||||||||||||| ||                   |||                     A   CGCACGUUC UUUGGUAGACUAGGCAAUCUAGCACUAGGUUGGUGUCUA UG                   UUG                     A UU         A                                       -  -------------------   GUAUCAAACAAUCCCCAAAAA
Stem-loop sequence	GCGUGCAAGCAAACCAUCUGAUCCGUUAGAUCGUGAUCCAACCGUAGGUCACAUUUAAUACUUAAACCCUUCCACCACUGGCUCAAUAAUCUUUAUAAAAAAACCCCUAACAAACUAUGGUUGUAUCUGUGGUUGGAUCACGAUCUAACGGAUCAGAUGGUUUACUUGCACGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163805.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||||||=|||||||| targets:23   AAGCGUGCAAGUAAAUCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1469 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235474.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||||||=|||||||| targets:23   AAGCGUGCAAGUAAAUCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1469 from Patent EP2985353	NA	coding protein	psRNATarget
HI403344.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||||||=|||||||| targets:23   AAGCGUGCAAGUAAAUCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1469 from Patent EP2074227	NA	coding protein	psRNATarget
JB163734.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||||||=|||||||| targets:23   AAGCGUGCAAGUAAAUCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1398 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235403.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||||||=|||||||| targets:23   AAGCGUGCAAGUAAAUCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1398 from Patent EP2985353	NA	coding protein	psRNATarget
HI403273.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||||||=|||||||| targets:23   AAGCGUGCAAGUAAAUCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1398 from Patent EP2074227	NA	coding protein	psRNATarget
JB163887.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:22   AAGCGUGCAAGCAAACCAUCUGAU   45 Target Full Sequence	1.5	Sequence 1551 from Patent EP2559767	NA	coding protein	psRNATarget
HI403426.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:22   AAGCGUGCAAGCAAACCAUCUGAU   45 Target Full Sequence	1.5	Sequence 1551 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235556.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:22   AAGCGUGCAAGCAAACCAUCUGAU   45 Target Full Sequence	1.5	Sequence 1551 from Patent EP2985353	NA	coding protein	psRNATarget
HI403456.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:24   AAGCGUGCAAGCAAACCAUCUGAU   47 Target Full Sequence	1.5	Sequence 1581 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235586.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:24   AAGCGUGCAAGCAAACCAUCUGAU   47 Target Full Sequence	1.5	Sequence 1581 from Patent EP2985353	NA	coding protein	psRNATarget
JB163917.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:24   AAGCGUGCAAGCAAACCAUCUGAU   47 Target Full Sequence	1.5	Sequence 1581 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020538741.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:824   AAGCGUGCAAGCAAACCAUCUGAU   847 Target Full Sequence	1.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648194.2	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   |||||||||||*|||||||||||| targets:824   AAGCGUGCAAGCAAACCAUCUGAU   847 Target Full Sequence	1.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402933.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   ||*|||*||||||||||||||||| targets:31   AACCGUACAAGUAAACCAUCUGAU   54 Target Full Sequence	1.0	Sequence 1058 from Patent EP2074227	NA	coding protein	psRNATarget
JB163394.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   ||*|||*||||||||||||||||| targets:31   AACCGUACAAGUAAACCAUCUGAU   54 Target Full Sequence	1.0	Sequence 1058 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235063.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   ||*|||*||||||||||||||||| targets:31   AACCGUACAAGUAAACCAUCUGAU   54 Target Full Sequence	1.0	Sequence 1058 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548736.1	ncRNA:24   UUCGCACGUUCAUUUGGUAGACUA   1   ||||||||||*||||||||||*|| targets:1676   AAGCGUGCAAAUAAACCAUCUAAU   1699 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA	NA	coding protein	psRNATarget
JB163476.1	ncRNA:23   UCGCACGUUCAUUUGGUAGACUA   1   |*=||||||||||||||||||=| targets:1   ACUGUGCAAGUAAACCAUCUGGU   23 Target Full Sequence	1.5	Sequence 1140 from Patent EP2559767	NA	coding protein	psRNATarget
HI403015.1	ncRNA:23   UCGCACGUUCAUUUGGUAGACUA   1   |*=||||||||||||||||||=| targets:1   ACUGUGCAAGUAAACCAUCUGGU   23 Target Full Sequence	1.5	Sequence 1140 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235145.1	ncRNA:23   UCGCACGUUCAUUUGGUAGACUA   1   |*=||||||||||||||||||=| targets:1   ACUGUGCAAGUAAACCAUCUGGU   23 Target Full Sequence	1.5	Sequence 1140 from Patent EP2985353	NA	coding protein	psRNATarget
JB163648.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGCAAACCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1312 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235317.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGCAAACCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1312 from Patent EP2985353	NA	coding protein	psRNATarget
HI403187.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGCAAACCAUCUGAU   46 Target Full Sequence	1.5	Sequence 1312 from Patent EP2074227	NA	coding protein	psRNATarget
JB163400.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||=|||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGUAAGCAAACCAUCUGAU   46 Target Full Sequence	2.5	Sequence 1064 from Patent EP2559767	NA	coding protein	psRNATarget
HI402939.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||=|||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGUAAGCAAACCAUCUGAU   46 Target Full Sequence	2.5	Sequence 1064 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235069.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||=|||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGUAAGCAAACCAUCUGAU   46 Target Full Sequence	2.5	Sequence 1064 from Patent EP2985353	NA	coding protein	psRNATarget
HI403117.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||=|||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGUAAGCAAACCAUCUGAU   46 Target Full Sequence	2.5	Sequence 1242 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235247.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||=|||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGUAAGCAAACCAUCUGAU   46 Target Full Sequence	2.5	Sequence 1242 from Patent EP2985353	NA	coding protein	psRNATarget
JB163578.1	ncRNA:24   UUCG---------CACGUUCAUUUGGUAGACUA   1   ||||---------|||=|||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGUAAGCAAACCAUCUGAU   46 Target Full Sequence	2.5	Sequence 1242 from Patent EP2559767	NA	coding protein	psRNATarget