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BaseInfo

ncRNA ID novel_zma_miR4872
Species Zea mays
Class miRNA
Genome position Chr3:84304773-84304890 [+]
Reference genome RefGen_v4
Source SRR1618882;SRR1618883;SRR4237220;SRR4237221;SRR4237222;SRR4237223;SRR4237226;SRR5100248;SRR5100255;SRR5105959
Length 24
Mature sequence(if miRNA) 1 - AUAGCAUUUGAGAACAAGUCCCCU - 24
Stem-loop(if miRNA) --                       -U   -AU   GUACA  UGGAUGUUUCAUAUAGAA
  AUAGCAUUUGAGAACAAGUCCCC  CCU   UCA     GG                  A
  |||||||||||||||||||||||  |||   |||     ||                  G
  UAUCGUAAACUCUUGUUCAGGGG  GGA   GGU     CG                  A
AG                       UU   GGU   ---AA  AUAUUCGAAGAAAUUACG
Stem-loop sequence AUAGCAUUUGAGAACAAGUCCCCUCCUAUUCAGUACAGGUGGAUGUUUCAUAUAGAAAGAGCAUUAAAGAAGCUUAUAGCAAUGGUGGAGGUUGGGGACUUGUUCUCAAAUGCUAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY107114.2
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||||||||||||
targets:436   UGGGGACUUGUUCUCAAAUGCUAU   459

0.0 Zea mays PCO088471 mRNA sequence NA coding protein psRNATarget
EU949769.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||||||||||||
targets:498   UGGGGACUUGUUCUCAAAUGCUAU   521

0.0 Zea mays clone 444433 mRNA sequence NA coding protein psRNATarget
BT036330.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||||||||||||
targets:1507   UGGGGACUUGUUCUCAAAUGCUAU   1530

0.0 Zea mays full-length cDNA clone ZM_BFb0107H04 mRNA, complete cds NA coding protein psRNATarget
XM_020552538.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||||||||||||
targets:3075   UGGGGACUUGUUCUCAAAUGCUAU   3098

0.0 PREDICTED: Zea mays ADP-ribosylation factor GTPase-activating protein AGD3-like (LOC103653236), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020552540.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||||||||||||
targets:3293   UGGGGACUUGUUCUCAAAUGCUAU   3316

0.0 PREDICTED: Zea mays ADP-ribosylation factor GTPase-activating protein AGD3-like (LOC103653236), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020552537.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||||||||||||
targets:3304   UGGGGACUUGUUCUCAAAUGCUAU   3327

0.0 PREDICTED: Zea mays ADP-ribosylation factor GTPase-activating protein AGD3-like (LOC103653236), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680517.2
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||||||||||||
targets:8901   UGGGGACUUGUUCUCAAAUGCUAU   8924

0.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560 (LOC103653689), mRNA NA coding protein psRNATarget
EU966056.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||=|||||||||
targets:727   UGGGGACUUGUUCUUAAAUGCUAU   750

1.5 Zea mays clone 291270 mRNA sequence NA coding protein psRNATarget
XM_020539812.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||||=||||||||||||||||||
targets:992   UGGGGGCUUGUUCUCAAAUGCUAU   1015

1.0 PREDICTED: Zea mays uncharacterized LOC109940336 (LOC109940336), mRNA NA coding protein psRNATarget
XM_008658202.2
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||||||||||||||||||||||*
targets:472   UGGGGACUUGUUCUCAAAUGCUAA   495

1.0 PREDICTED: Zea mays uncharacterized LOC103635826 (LOC103635826), transcript variant X1, mRNA NA coding protein psRNATarget
EU953987.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||||||||||||||||||||||*
targets:596   UGGGGACUUGUUCUCAAAUGCUAA   619

1.0 Zea mays clone 1450963 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU967213.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||||||||||||||||||||||*
targets:672   UGGGGACUUGUUCUCAAAUGCUAA   695

1.0 Zea mays clone 300368 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150816.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||||||||||||||||||||||*
targets:672   UGGGGACUUGUUCUCAAAUGCUAA   695

1.0 Zea mays uncharacterized LOC100277170 (LOC100277170), mRNA NA coding protein psRNATarget
EU954760.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||||||||||=||||||||*
targets:471   UGGGGACUUGUUCUUAAAUGCUAA   494

2.5 Zea mays clone 1480376 mRNA sequence NA coding protein psRNATarget
EU945045.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||||||||||||||||=|||||*
targets:523   UGGGGACUUGUUCUCAAGUGCUAA   546

2.5 Zea mays clone 239103 mRNA sequence NA coding protein psRNATarget
EU944041.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||*||||||||||||||||||||
targets:418   UGGAGACUUGUUCUCAAAUGCUAU   441

0.0 Zea mays clone 1704735 mRNA sequence NA coding protein psRNATarget
XM_008665259.2
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||*||||||||||||||||||||
targets:1677   UGGUGACUUGUUCUCAAAUGCUAU   1700

0.0 PREDICTED: Zea mays dof zinc finger protein DOF1.8 (LOC103641961), mRNA NA coding protein psRNATarget
NM_001138859.2
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||*||||||||||||||||||||
targets:1793   UGGAGACUUGUUCUCAAAUGCUAU   1816

0.0 Zea mays anthocyanidin 5,3-O-glucosyltransferase (LOC100193773), mRNA NA coding protein psRNATarget
EU973086.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||*||||||||||||||||||||
targets:1793   UGGAGACUUGUUCUCAAAUGCUAU   1816

0.0 Zea mays clone 393067 anthocyanidin 5,3-O-glucosyltransferase mRNA, complete cds NA coding protein psRNATarget
XM_008666605.2
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||||||||*||||||||||||||
targets:2616   UGGGGACUUUUUCUCAAAUGCUAU   2639

1.0 PREDICTED: Zea mays uncharacterized LOC103643432 (LOC103643432), mRNA NA coding protein psRNATarget
XM_008662910.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  **|||==|||||||||||||||||
targets:437   UUGGGGUUUGUUCUCAAAUGCUAU   460

2.0 PREDICTED: Zea mays uncharacterized LOC103640303 (LOC103640303), mRNA NA coding protein psRNATarget
XM_008663047.2
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *|||||=||*||||||||||||||
targets:2615   UGGGGAUUUAUUCUCAAAUGCUAU   2638

2.0 PREDICTED: Zea mays achilleol B synthase (LOC103640480), mRNA NA coding protein psRNATarget
EZ065050.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  **|||||||||||||||||*||||
targets:91   UAGGGACUUGUUCUCAAAUACUAU   114

1.5 TSA: Zea mays contig00682, mRNA sequence NA coding protein psRNATarget
EU940950.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||*|||||||||||||||||||*
targets:231   UGGAGACUUGUUCUCAAAUGCUAA   254

1.0 Zea mays clone 1220266 mRNA sequence NA coding protein psRNATarget
EU949898.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||*|||||||||||||=|||||*
targets:1324   UGGAGACUUGUUCUCAAGUGCUAA   1347

2.5 Zea mays clone 451796 mRNA sequence NA coding protein psRNATarget
BT018486.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  *||*||||*|||||||||||||||
targets:1746   UGGAGACUCGUUCUCAAAUGCUAU   1769

1.0 Zea mays clone EL01N0424E08.d mRNA sequence NA coding protein psRNATarget
NM_001347051.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  ****||=|*||||||||||||||*
targets:1527   CAAAGAUUGGUUCUCAAAUGCUAC   1550

3.0 Zea mays DNAJ heat shock N-terminal domain-containing protein (LOC103650196), mRNA NA coding protein psRNATarget
XM_020550014.1
ncRNA:24   UCCCCUGAACAAGAGUUUACGAUA   1
  ****||=|*||||||||||||||*
targets:1258   CAAAGAUUGGUUCUCAAAUGCUAC   1281

3.0 PREDICTED: Zea mays DNAJ heat shock N-terminal domain-containing protein (LOC103650196), transcript variant X1, mRNA NA coding protein psRNATarget
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