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BaseInfo

ncRNA ID	novel_zma_miR4871
Species	Zea mays
Class	miRNA
Genome position	Chr8:62241572-62241631 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	37 - CGGAUGGUCCGCGGCCUGGUGCGA - 60
Stem-loop(if miRNA)	--     G    GC    - G    G   CUA   CGGAU GUCC  GGCC U GUGC AGG   G   ||||| ||||  |||| | |||| |||   GCCUG CAGG  CCGG A UACG UCC   G GC     G    --    C G    -   UUG
Stem-loop sequence	CGGAUGGUCCGCGGCCUGGUGCGAGGCUAGGGUUCCUGCAUGACGGCCGGACGGUCCGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539115.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   |||||||||||||||||||=|||| targets:2754   UCGCACCAGGCCGCGGACCGUCCG   2777 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   **|||||||||||||||||=|||| targets:2681   GGGCACCAGGCCGCGGACCGUCCG   2704 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   *||||||||||||||||||=|||| targets:1238   GCGCACCAGGCCGCGGACCGUCCG   1261 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   AGC-GUGGUCCGGCGCCUGGUAGGC   1   |||-|*|||||*||||||||=|||| targets:1188   UCGGCCCCAGGGCGCGGACCGUCCG   1212 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   *||||||||||||||||||=|||| targets:1238   GCGCACCAGGCCGCGGACCGUCCG   1261 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   AGC-GUGGUCCGGCGCCUGGUAGGC   1   |||-|*|||||*||||||||=|||| targets:1188   UCGGCCCCAGGGCGCGGACCGUCCG   1212 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   **||*||||||||||||||=|||| targets:86   CGGCCCCAGGCCGCGGACCGUCCG   109 Target Full Sequence	1.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget
EZ067064.1	ncRNA:21   GUGGUCCGGCGCCUGGUAGGC   1   |||=||||||||||||=|||| targets:1   CACUAGGCCGCGGACCGUCCG   21 Target Full Sequence	2.5	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
XM_020538749.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   ||-==||=|||*|||||||||||| targets:1757   UC-UGCCGGGCGGCGGACCAUCCG   1779 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103627902), mRNA	NA	coding protein	psRNATarget
EU958395.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   **|||*|*|||||||||||||||* targets:390   CAGCAGCCGGCCGCGGACCAUCCC   413 Target Full Sequence	3.0	Zea mays clone 1689145 mtN19-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154625.2	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   **|||*|*|||||||||||||||* targets:417   CAGCAGCCGGCCGCGGACCAUCCC   440 Target Full Sequence	3.0	Zea mays MtN19-like protein (pco070301), mRNA	NA	coding protein	psRNATarget
EU958195.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   **|||*|*|||||||||||||||* targets:411   CAGCAGCCGGCCGCGGACCAUCCC   434 Target Full Sequence	3.0	Zea mays clone 1677872 mtN19-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EU957593.1	ncRNA:24   AGCGUGGUCCGGCGCCUGGUAGGC   1   **|||*|*|||||||||||||||* targets:486   CAGCAGCCGGCCGCGGACCAUCCC   509 Target Full Sequence	3.0	Zea mays clone 1598492 mtN19-like protein mRNA, complete cds	NA	coding protein	psRNATarget